BtaINT0009044 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MXP8]
Coordinates
chr7:45565937-45566208:-
Coord C1 exon
chr7:45566136-45566208
Coord A exon
chr7:45566029-45566135
Coord C2 exon
chr7:45565937-45566028
Length
107 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
GACTCTCTCTCCCCAAGTAGGGT
3' ss Score
6.89
Exon sequences
Seq C1 exon
ACCCCGCTCCCTCTGGAACCTCTTGCTCCTGCTGTGGACCTTCCTGAATTGTGGTTTGGGGGGCAACGCTCAG
Seq A exon
GTAAAAGGGGACATAGGCCCGGGGGCAGCAGGGATGGGGACCTGGCTGCGGCATGGGGTTAGCCAGCCTCCCCTCCAGGCTGACTGTGACTCTCTCTCCCCAAGTAG
Seq C2 exon
GGTCCGGGTGAGTGGACGCCATGGGGTTCCTGGAGTCGCTGTTCCAGCTCTTGCGGGCGAGGGCTCTCAGTGCGCAGCCGGAGATGTATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046263:ENSBTAT00000065686:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009014=TSP_1=PU(52.1=80.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGCTCCCTCTGGAAC
R:
GATACATCTCCGGCTGCGC
Band lengths:
162-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]