HsaINT0004367 @ hg19
Intron Retention
Gene
ENSG00000185761 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:27912]
Coordinates
chr19:1510638-1511159:-
Coord C1 exon
chr19:1510844-1511159
Coord A exon
chr19:1510730-1510843
Coord C2 exon
chr19:1510638-1510729
Length
114 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GCCTCTGTCTCCCCAAGTAGGGT
3' ss Score
7.71
Exon sequences
Seq C1 exon
ATGACATTCTGAGTTCTTCCTCTCCATACCGGGCTCCACGTCTCCTGTCTTCTTTACCTGATCCACAGGACCCCTCAACTTTCCTGTAAGGGAGGCTCTATTACCCCGTTTTTCAGAGACGAGAGGTAGGGCTCAGAGAGGTTTAGTTACTTTCCAAGATCACACAGCCAGTCAGGGCAGAGCCGGGACACAACCCTGTGTCTCTGGCGGTGGCTCTATGGACTCGGCCCCTCTGTTCCCCAGGCCCCACCTCTTCCAGAACCTCCTGCTCTTCCTGTGGGCCCTGCTGAACTGTGGTTTGGGGGTCAGTGCTCAG
Seq A exon
GTAAGGGGGGGCATGAGCCCAGGGGGTGGCGAGTGGGAATGGGGACCCAGTCAGCAGTGTGGGGTCACCAGCGTCCCCCTACAAGGCTGACCGTGCCTCTGTCTCCCCAAGTAG
Seq C2 exon
GGTCCGGGCGAGTGGACCCCGTGGGTGTCCTGGACCCGCTGCTCCAGCTCCTGCGGGCGTGGCGTCTCTGTGCGCAGCCGGCGCTGCCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185761-ADAMTSL5:NM_213604:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009014=TSP_1=PU(52.1=80.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACGAGAGGTAGGGCTCAG
R:
CAGCGGGTCCAGGACACC
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)