RnoINT0013684 @ rn6
Intron Retention
Gene
ENSRNOG00000033787 | Adamtsl5
Description
ADAMTS-like 5 [Source:RGD Symbol;Acc:1305607]
Coordinates
chr7:12229379-12230248:+
Coord C1 exon
chr7:12229379-12229469
Coord A exon
chr7:12229470-12230179
Coord C2 exon
chr7:12230180-12230248
Length
710 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CCCGCCTCTCTTCTCTGCAGACC
3' ss Score
12.15
Exon sequences
Seq C1 exon
CAGTCCCGCACTTTGGGGCCCCGCCGCTTCCGCCAGTCCCTGGGGCGACCCAGGGAAGCTTGGACGCATTGCCTTGGGCTCTGAGCAACTG
Seq A exon
GTAAGTCCCTCCTCGTATCCTGCCGCTATTCCACCTGGTGTGGCGACGATGAGATTGGTTTCTTTCTCTCCTTGGAGCGAAAGCAGCGATCCCTAGGATGGTTGTGAGTTTTGGGGGTCGCACTTCCTCCGGGATGGGACTGAAACTCAGGAGACTGGCACCCCAGTGGCTGGTACGCCAATGCCGGACAGGCAGGGATGCAGTGTTCCGGAGAGGGCATTGACCGACGTGGGTAGGAGCCCCCGCCCCCCACGAAGGGGGTTATGGGATGGCCGGTCCCCAGCCTCCTTCTTCCTTCCTGGGGCAGCCCGGTCTCTTGGTCCGCAGAGGGAAGGGTCCGGCGCGCGTCTTGAAGCAGCTCCCGTGGGTTTCCAACTTGTACAGCCACCTCGGTCCCAAGGTGCCCTAAAGGGCATCAGATTGGCGGACAACCCGGGAGACCCTGGTTCCAGCCGGGCTAGGAGACCTTGGCCTTCCTTACCCCTTCCTCGGGTACCTGGACCCTGTGGGCTGCAAAACTTTGAGAGCCCGTGTGCCCTTCAGAGAGCCTGGACCGGGGCCCAGAAGGGACTCACTTCATCTTGGTTCCCTTCCCTCCTGGCCAAGCCGGGATCACGAGGAGGGCGTGGGCTGAGAATGACTTCATCGGGTCTCTGCAGTTGGGGAAACTGAGGCCTCCACTCAGCCCCACCCGCCTCTCTTCTCTGCAG
Seq C2 exon
ACCCTCTGGGCACCGCAGCCCGCACTCCTGGCTGATGAGACCATGACGCACATGTTGGCAGGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033787:ENSRNOT00000060811:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]