MmuEX0006154 @ mm10
Exon Skipping
Gene
ENSMUSG00000026960 | Arl6ip6
Description
ADP-ribosylation factor-like 6 interacting protein 6 [Source:MGI Symbol;Acc:MGI:1929507]
Coordinates
chr2:53192088-53194337:+
Coord C1 exon
chr2:53192088-53192522
Coord A exon
chr2:53192654-53192788
Coord C2 exon
chr2:53194284-53194337
Length
135 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTCTTCTCTCCCTAGATG
3' ss Score
13.06
5' ss Seq
AAAGTACGT
5' ss Score
7.99
Exon sequences
Seq C1 exon
AGCCGACCTTCGCGGGACTCTCAGTCTTTCCCGCCATGTCGTTCGTGGAGAGTTGGAGGTTTGCGGGCGCGCGGAGGCGCCGTCAGGTTACCCCAGGCCCTGCGACTCGGCCCGGGTATTCCGACTACACTCAGGGGGACAGCTGGGGTGAGGGCGAAGGCGACGAAGACGAGGGATGCGACCAAGTGGCCCGCGACTTGCGGGCAGAGTTCTCAGCCAGGGCGTCGTCGGAGACCAAGAGGGCCCCGCTACTCCCCCGGGTCGGGGACGGGTCTCCGGTCCTGCCGGATAAGCGCAACGGCATCTTCCCGGCCACTGCGGCCAAGCGAACCCAGGCTCGGCGGTGGCCCATCCAAGCCCTTTCCATTCTCTGTTCGCTGCTGTTCGCCGTCCTCCTTGCTTTCCTTCTCGCCATCGCCTACATGATCGTTAAAG
Seq A exon
ATGGACGTCCTTGCTCCGTCATGAGACCCATTTAGAAAAGATCTTTGGCTAAATCTACAGTCTTTAATGCCGTAAAGGCATTGAACACTTTGAGTTGAAACAGCAGAGCCCCTTACTTTTAAAAGGATCAAAAAA
Seq C2 exon
AATTGCATGCAGAAAACTTGAAAAATGAAGATGATATACATACTGGGCTGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026960-'2-3,'2-2,3-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF150621=ARL6IP6=PU(18.2=73.7)
Main Inclusion Isoform:
ENSMUST00000028336fB517
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGTTCTCAGCCAGGGC
R:
CATTTTTCAAGTTTTCTGCATGCA
Band lengths:
258-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types