MmuEX0006154 @ mm9
Exon Skipping
Gene
ENSMUSG00000026960 | Arl6ip6
Description
ADP-ribosylation factor-like 6 interacting protein 6 [Source:MGI Symbol;Acc:MGI:1929507]
Coordinates
chr2:53051122-53053371:+
Coord C1 exon
chr2:53051122-53051556
Coord A exon
chr2:53051688-53051822
Coord C2 exon
chr2:53053318-53053371
Length
135 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTCTTCTCTCCCTAGATG
3' ss Score
13.06
5' ss Seq
AAAGTACGT
5' ss Score
7.99
Exon sequences
Seq C1 exon
AGCCGACCTTCGCGGGACTCTCAGTCTTTCCCGCCATGTCGTTCGTGGAGAGTTGGAGGTTTGCGGGCGCGCGGAGGCGCCGTCAGGTTACCCCAGGCCCTGCGACTCGGCCCGGGTATTCCGACTACACTCAGGGGGACAGCTGGGGTGAGGGCGAAGGCGACGAAGACGAGGGATGCGACCAAGTGGCCCGCGACTTGCGGGCAGAGTTCTCAGCCAGGGCGTCGTCGGAGACCAAGAGGGCCCCGCTACTCCCCCGGGTCGGGGACGGGTCTCCGGTCCTGCCGGATAAGCGCAACGGCATCTTCCCGGCCACTGCGGCCAAGCGAACCCAGGCTCGGCGGTGGCCCATCCAAGCCCTTTCCATTCTCTGTTCGCTGCTGTTCGCCGTCCTCCTTGCTTTCCTTCTCGCCATCGCCTACATGATCGTTAAAG
Seq A exon
ATGGACGTCCTTGCTCCGTCATGAGACCCATTTAGAAAAGATCTTTGGCTAAATCTACAGTCTTTAATGCCGTAAAGGCATTGAACACTTTGAGTTGAAACAGCAGAGCCCCTTACTTTTAAAAGGATCAAAAAA
Seq C2 exon
AATTGCATGCAGAAAACTTGAAAAATGAAGATGATATACATACTGGGCTGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026960-'1-2,'1-1,2-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF150621=ARL6IP6=PU(18.2=73.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGTTCTCAGCCAGGGC
R:
CATTTTTCAAGTTTTCTGCATGCA
Band lengths:
258-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: