MmuEX0007056 @ mm9
Exon Skipping
Gene
ENSMUSG00000046876 | Atxn1
Description
ataxin 1 [Source:MGI Symbol;Acc:MGI:104783]
Coordinates
chr13:45947697-46060345:-
Coord C1 exon
chr13:46060184-46060345
Coord A exon
chr13:46051824-46051944
Coord C2 exon
chr13:45947697-45947825
Length
121 bp
Sequences
Splice sites
3' ss Seq
CACTTCCTGGACCTTCATAGAAG
3' ss Score
3.16
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TTTCTACTACAGTGGAGGAGCCGTACAGGACCTGTTTCACTGCAGGGGGATCCAAAACAAGCCCTGTGGAGCCGCAGCTAGAGCTACAGCAGCCGCAGGACACTGTGTCTCTCCCTCTGTTACCCCTTCCCCACGCAACCCCAGATCCATTTACACTTTACA
Seq A exon
AAGTATCCTGCACCGTGCAACAAGTACGAGGGCGGTCGCTTCAAGCTGCAGATCTGTCTGTCATCCTTATCCAACAGTCTCTTCCTCCACTCCCTCCACAGGGAAGGGCGTCACCTGTCAG
Seq C2 exon
ATTGCAGCATCCTGGAACAGAATGAAAGGATCTGTGTTGAAACAGCTACAGTAGGGTTACAGTAGACCCTGAGAAAAACAGAGTGGACTTCAGCCTGCACGGATGAGCTTGAAGCAGGAATGGTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046876-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTTCACTGCAGGGGGATC
R:
TTCCTGCTTCAAGCTCATCCG
Band lengths:
251-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: