MmuEX0007060 @ mm10
Exon Skipping
Gene
ENSMUSG00000046876 | Atxn1
Description
ataxin 1 [Source:MGI Symbol;Acc:MGI:104783]
Coordinates
chr13:45566573-45697945:-
Coord C1 exon
chr13:45697821-45697945
Coord A exon
chr13:45681223-45681310
Coord C2 exon
chr13:45566573-45568580
Length
88 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTTCCCATACTCCAGGGA
3' ss Score
8.08
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GTATTTCTAACCTCTCTGCGAAAGAAAGAAAGACACCACCAGAACCTGGGCATCCCAGCTGCTGAGGGAAGTTTCCATGGTGAAGTCTCAGGGAGGCTTCCTGGGAGCAGAGCATAGTGAATGCT
Seq A exon
GGACCACCATGCTTCTTGCGATACCTTTATCCAATCAAGCATCAGAACACAGCATTGACAGCTGAACCACTCTCCATCTACTGTACTG
Seq C2 exon
AATCCGGAGCTGCCACTGCCAGCCTAAAGAACCCACGGGGAGATGATTCCCCATGAAGGGCCTGGATCCCCTACAGAAATCCAATGTGACTCTCTGTTTATCAGACTAAAACCAGAGCCGGCCAGCCAGTGAAACAGCCACCGTGGAGGGGGGACGGCGAAAAATGAAATCCAACCAAGAGCGGAGCAACGAATGCCTGCCTCCCAAGAAACGTGAGATCCCCGCCACCAGCCGGCCCTCGGAGGAGAAGGCCACTGCTCTGCCCAGCGACAACCACTGCGTGGAGGGTGTGGCCTGGCTCCCCAGCACCCCTGGCATCCGCGGCCATGGGGGTGGGCGGCACGGGTCAGCAGGGACTTCCGGGGAGCATGGTTTACAAGGAATGGGTTTACATAAAGCACTGTCCGCAGGGCTGGATTACTCCCCACCCAGTGCCCCCAGGTCAGTCCCCACAGCCAACACGCTGCCCACCGTGTACCCTCCTCCTCAGTCAGGGACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046876_MULTIEX1-10/10=9-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.657
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF125473=ATXN-1_C=WD(100=5.0),PF085177=AXH=PU(56.5=10.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTGAAGTCTCAGGGAGGC
R:
GCCGGCTCTGGTTTTAGTCTG
Band lengths:
171-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types