MmuEX0007142 @ mm10
Exon Skipping
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:127000709-127003450:+
Coord C1 exon
chr10:127000709-127000831
Coord A exon
chr10:127003005-127003148
Coord C2 exon
chr10:127003366-127003450
Length
144 bp
Sequences
Splice sites
3' ss Seq
CCCCTCCTCCTCGCCCATAGAGA
3' ss Score
9.6
5' ss Seq
AAGGTGACA
5' ss Score
5.19
Exon sequences
Seq C1 exon
AATATAACCCTGTGTCTATGCTGTGCGGCCATTGCTGAAACAGGCTTCAGGACGGGCTGCTTTGGGAGACCTCATCAGTACTTCACCTGCTGCTTTGCCGGACTTCGGAGGACAGAGGGTCAG
Seq A exon
AGAGATGGCACATACTGGCCCAGCACCTACTTCTGGTGACTCACGACCGCCTGTCACTCCAGCTCCACAGAATTTAACACACCAACATGCATGTATGTTTTAAAGGAAATGTGTCATCCCTATGGCCCAGAGCTCTTGACCAAG
Seq C2 exon
TTCCAGGAAGACAGCCACTATGTCTCTGAGCAGTGCCTTCAGGGCTGTGAGCAACGACCCCCGGATCATCACATGGAGAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCTGTGTCTATGCTGTGC
R:
TCAATTCTCCATGTGATGATCCGG
Band lengths:
202-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types