MmuINT0022330 @ mm10
Intron Retention
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:127000709-127003450:+
Coord C1 exon
chr10:127000709-127000831
Coord A exon
chr10:127000832-127003365
Coord C2 exon
chr10:127003366-127003450
Length
2534 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CCGACTTTGTGATGTTTCAGTTC
3' ss Score
7.23
Exon sequences
Seq C1 exon
AATATAACCCTGTGTCTATGCTGTGCGGCCATTGCTGAAACAGGCTTCAGGACGGGCTGCTTTGGGAGACCTCATCAGTACTTCACCTGCTGCTTTGCCGGACTTCGGAGGACAGAGGGTCAG
Seq A exon
GTAGGTCTACTCTGTGTGTCCTTGTCAGCCAAATGCTGAGTGTGGATGAGGCCAAAGGTGAAGAAGGGACAAGAGTCATACCTTCCCTGGCTTTTGTCTTTGGGGATGCAGCTTTGGAAAGATGGAGCTTTGCAAACTTCACACTGAGAGAACCTGTAGATCCCACTGGCTAGGTTGGGCACGTTCTTGAGGCTCAGGGATTTGGGGTAACAAGACCCCTCTCATCTGTTCCACTGTGGGGCAAGAGAAGTTTAAACCCCAGTAGGTTACAAGCTACCTGGAATCCCCAGACCATACCCCGTGCCTGTGATCTTTGTAGCTCTCCGTACCCCAAAGTGCTGGTGGTTACGGCTTGGGAAGACAAACAGACCCAGCTTTGGGGGACTTTGATGTGGATAGATGGAACTGGGCTTTCTGGGTGTGGCATTTCCTGAATCTTGGGTCTCTAATCAGCTCCTGGATTCTGAAGTTCCATGGGGGACATGGGACTGCACTGGGGGCTCGGATTCACCGTGCTAAGGTTGCTGGTTAGGCTTTACCGATAACCAGGACTGTGTCAGCTCTGGTTCCCTTTCCTGGGTGGGTCACGCATTAGACTTAAAAGTGAGAGAACTCGGCCTGAAGGAAAGCTGACTATTTCCTGGTGGTTCTGAGCTGTGCAGGGTGGGGCAGCACAAGTTATCAAATTAAATACTCAAACATTGGCAGTTCCGCACCACGGCTCTGCTTCAGTCTACTGCGGCATCACACAAAGGGGCCTGGCTCTTTGGTGGTAATGGTGCATCCTCTCCAAACCTGGTTAGATCCATTAGGGCTCAAGAAAAGAATGGTCGGTGGAGTCAGACCCTTTTTTTTCTTTTAGGGGTGGGGCCTTGCTGGGGATGACAGACGCCTACTATTTGAACAATGCCCCATCCCCAGACTTAACATAGTTAACAAGCCCTGAATATCACCAACTATCAAACATCCACACAATCTCCCTCCCCCTCCAATCCCCCGGGACGATTTTGTCTTTTAATCTCTCGTAAGTCCAACCATCCCATCTTTGAGTCTTAGGAGAAGCCAACCTAGCGATCACTTGGCATACCGTGAGAGCTCAGTCTCCCCGAGGGTAGGACTTGAGATGAGACATGTTCGCAGACCTACTGGGTCACCTCGTGTGTTAACCCCAGCCAAGTGCTGACTACTGTGACCAGCGTAAGATCCCCGTGGTCATCTTACCACTTCCCTCCCTGGCCTTATTCAGCTCTATGGGTGCTGGGAACCTCTAAGCTCCCTGAGAACAAGCCTTCCAGAGAAGCTGGGGTCTGCGTGGGACAGGCAGGGAGGCCTGCACCCATTTTCCTTGCTGACACACTCAGCTCTTTGTCCTAGGCACAGGCATTGTACCTTCCCCTTTCTTCTGCAAGACCAGTTCATGTATTAGTCATGAGAAAGGGTGGTTACTGTTCTAGGATGATTTGCAAAGTTAAAAGTGATAGCCAAGAGCAGGTGGGGGTGACAAGGTCTTGCCAGGCATCTGGGAAGAGGAGTTCAAGAATTGGGAGGAGGGGCTTCATTTGGAAATACTTTTTCTGTCTGGATTTCCTCTCTGTGAGCAACTGAACTTAGTTTTGGGAAGGCTACAGCATGAAAACATGGCTAAAACACAGACTTTTAAGGGCAGGTGTGAAAGAAAATAAAAGGGATGGACCTAGGTCTGGTGGCAGAAGCCTGTAACGCTGGCACTCAGGAGGCTAAGGCAGCTAAAGCAGAGGAGTTTACGACCAGCCCGGGCTACATGGATAGATCCTGTGCTGATAAAATGTGCCAGGCAGTGGTGGGTCATGTCTTTAATTCCAGATCTCGGGAGGCAGAGACAGGGGGATCTCCTTGAGTTCAGGGCCAGCCTTGTCTACAGAGTGAGTTCCAGCATGGCCAGGGTCTCAGGGACCCTTTCTTGAAAAAAGTAAAACAAAATGAAACCAAAAAAGCTCAGCTCTGGGGCCCATGCTAGCGTGTCTATAGACAGATTATCTGCAATCTCTCTAAGCCTCATCTGTACCACAGGTGACAGGGAGATGGCCACTTCCTGAAAATGAGCCACTGTGGGCAGTGGGTCAACATGGGCGTGACATTGTCACACTCAGGAATATGTGTTGCCTTTCCTGCCACCCCTCCTCCTCGCCCATAGAGAGATGGCACATACTGGCCCAGCACCTACTTCTGGTGACTCACGACCGCCTGTCACTCCAGCTCCACAGAATTTAACACACCAACATGCATGTATGTTTTAAAGGAAATGTGTCATCCCTATGGCCCAGAGCTCTTGACCAAGGTGACAGCAGGTGGGAGACAAGCCTTTCGAGGAGGGAATGCCCAGCCAGGTCACTATGTGAACTTGGGCTGCCATGGTGAAATGGTGTGGTGGTGGCATGGTGATATACCGAATGGGGATGCGGTGTGGTGGCTGACGAGACAGGGAAGTGTCTTGGGAGAAGCAATGGCTCCCTGTTCACTGTGAGTAGGATCACCCCGACTTTGTGATGTTTCAG
Seq C2 exon
TTCCAGGAAGACAGCCACTATGTCTCTGAGCAGTGCCTTCAGGGCTGTGAGCAACGACCCCCGGATCATCACATGGAGAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432:ENSMUST00000026500:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types