MmuINT0022330 @ mm9
Intron Retention
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:126437765-126440506:+
Coord C1 exon
chr10:126437765-126437887
Coord A exon
chr10:126437888-126440421
Coord C2 exon
chr10:126440422-126440506
Length
2534 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CCGACTTTGTGATGTTTCAGTTC
3' ss Score
7.23
Exon sequences
Seq C1 exon
AATATAACCCTGTGTCTATGCTGTGCGGCCATTGCTGAAACAGGCTTCAGGACGGGCTGCTTTGGGAGACCTCATCAGTACTTCACCTGCTGCTTTGCCGGACTTCGGAGGACAGAGGGTCAG
Seq A exon
GTAGGTCTACTCTGTGTGTCCTTGTCAGCCAAATGCTGAGTGTGGATGAGGCCAAAGGTGAAGAAGGGACAAGAGTCATACCTTCCCTGGCTTTTGTCTTTGGGGATGCAGCTTTGGAAAGATGGAGCTTTGCAAACTTCACACTGAGAGAACCTGTAGATCCCACTGGCTAGGTTGGGCACGTTCTTGAGGCTCAGGGATTTGGGGTAACAAGACCCCTCTCATCTGTTCCACTGTGGGGCAAGAGAAGTTTAAACCCCAGTAGGTTACAAGCTACCTGGAATCCCCAGACCATACCCCGTGCCTGTGATCTTTGTAGCTCTCCGTACCCCAAAGTGCTGGTGGTTACGGCTTGGGAAGACAAACAGACCCAGCTTTGGGGGACTTTGATGTGGATAGATGGAACTGGGCTTTCTGGGTGTGGCATTTCCTGAATCTTGGGTCTCTAATCAGCTCCTGGATTCTGAAGTTCCATGGGGGACATGGGACTGCACTGGGGGCTCGGATTCACCGTGCTAAGGTTGCTGGTTAGGCTTTACCGATAACCAGGACTGTGTCAGCTCTGGTTCCCTTTCCTGGGTGGGTCACGCATTAGACTTAAAAGTGAGAGAACTCGGCCTGAAGGAAAGCTGACTATTTCCTGGTGGTTCTGAGCTGTGCAGGGTGGGGCAGCACAAGTTATCAAATTAAATACTCAAACATTGGCAGTTCCGCACCACGGCTCTGCTTCAGTCTACTGCGGCATCACACAAAGGGGCCTGGCTCTTTGGTGGTAATGGTGCATCCTCTCCAAACCTGGTTAGATCCATTAGGGCTCAAGAAAAGAATGGTCGGTGGAGTCAGACCCTTTTTTTTCTTTTAGGGGTGGGGCCTTGCTGGGGATGACAGACGCCTACTATTTGAACAATGCCCCATCCCCAGACTTAACATAGTTAACAAGCCCTGAATATCACCAACTATCAAACATCCACACAATCTCCCTCCCCCTCCAATCCCCCGGGACGATTTTGTCTTTTAATCTCTCGTAAGTCCAACCATCCCATCTTTGAGTCTTAGGAGAAGCCAACCTAGCGATCACTTGGCATACCGTGAGAGCTCAGTCTCCCCGAGGGTAGGACTTGAGATGAGACATGTTCGCAGACCTACTGGGTCACCTCGTGTGTTAACCCCAGCCAAGTGCTGACTACTGTGACCAGCGTAAGATCCCCGTGGTCATCTTACCACTTCCCTCCCTGGCCTTATTCAGCTCTATGGGTGCTGGGAACCTCTAAGCTCCCTGAGAACAAGCCTTCCAGAGAAGCTGGGGTCTGCGTGGGACAGGCAGGGAGGCCTGCACCCATTTTCCTTGCTGACACACTCAGCTCTTTGTCCTAGGCACAGGCATTGTACCTTCCCCTTTCTTCTGCAAGACCAGTTCATGTATTAGTCATGAGAAAGGGTGGTTACTGTTCTAGGATGATTTGCAAAGTTAAAAGTGATAGCCAAGAGCAGGTGGGGGTGACAAGGTCTTGCCAGGCATCTGGGAAGAGGAGTTCAAGAATTGGGAGGAGGGGCTTCATTTGGAAATACTTTTTCTGTCTGGATTTCCTCTCTGTGAGCAACTGAACTTAGTTTTGGGAAGGCTACAGCATGAAAACATGGCTAAAACACAGACTTTTAAGGGCAGGTGTGAAAGAAAATAAAAGGGATGGACCTAGGTCTGGTGGCAGAAGCCTGTAACGCTGGCACTCAGGAGGCTAAGGCAGCTAAAGCAGAGGAGTTTACGACCAGCCCGGGCTACATGGATAGATCCTGTGCTGATAAAATGTGCCAGGCAGTGGTGGGTCATGTCTTTAATTCCAGATCTCGGGAGGCAGAGACAGGGGGATCTCCTTGAGTTCAGGGCCAGCCTTGTCTACAGAGTGAGTTCCAGCATGGCCAGGGTCTCAGGGACCCTTTCTTGAAAAAAGTAAAACAAAATGAAACCAAAAAAGCTCAGCTCTGGGGCCCATGCTAGCGTGTCTATAGACAGATTATCTGCAATCTCTCTAAGCCTCATCTGTACCACAGGTGACAGGGAGATGGCCACTTCCTGAAAATGAGCCACTGTGGGCAGTGGGTCAACATGGGCGTGACATTGTCACACTCAGGAATATGTGTTGCCTTTCCTGCCACCCCTCCTCCTCGCCCATAGAGAGATGGCACATACTGGCCCAGCACCTACTTCTGGTGACTCACGACCGCCTGTCACTCCAGCTCCACAGAATTTAACACACCAACATGCATGTATGTTTTAAAGGAAATGTGTCATCCCTATGGCCCAGAGCTCTTGACCAAGGTGACAGCAGGTGGGAGACAAGCCTTTCGAGGAGGGAATGCCCAGCCAGGTCACTATGTGAACTTGGGCTGCCATGGTGAAATGGTGTGGTGGTGGCATGGTGATATACCGAATGGGGATGCGGTGTGGTGGCTGACGAGACAGGGAAGTGTCTTGGGAGAAGCAATGGCTCCCTGTTCACTGTGAGTAGGATCACCCCGACTTTGTGATGTTTCAG
Seq C2 exon
TTCCAGGAAGACAGCCACTATGTCTCTGAGCAGTGCCTTCAGGGCTGTGAGCAACGACCCCCGGATCATCACATGGAGAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432-Avil:NM_009635:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: