MmuEX0007486 @ mm9
Exon Skipping
Gene
ENSMUSG00000053508 | BC048502
Description
cDNA sequence BC048502 [Source:MGI Symbol;Acc:MGI:2652828]
Coordinates
chr15:103274706-103275373:-
Coord C1 exon
chr15:103275276-103275373
Coord A exon
chr15:103274965-103275085
Coord C2 exon
chr15:103274706-103274807
Length
121 bp
Sequences
Splice sites
3' ss Seq
ACAAGAATTATTCCTTCTAGAAA
3' ss Score
4.08
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GACTAATGGAGTTGGAATCCATAGAGCTATGTCCTTATGATCCAAACCACAGGATACCTGCCAGCAGGTTACAGTACCATCTGGCATCATGCAAAAAG
Seq A exon
AAAAATCCAAAGATAGCTAAAAAGATGGCTAACTGCAAATATAATGCTTGTCATGTGGTCCCAATCAAAAGGCTCAAGGAACATGAGGCCAACTGTATCAACAGGACTGCAGTGGATGATG
Seq C2 exon
AGCCACTTAACCTTCAAAAGATTACTCACCCAGTTTTTGAAGAAAATGAAAACTTCTCCAGTGCTGGGAGTCAATTTCCTGACCCTGATGTCTGGAACGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053508_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
PF052537=zf-U11-48K=WD(100=87.1),PF0213511=zf-TAZ=PU(20.3=41.9)
A:
PF0213511=zf-TAZ=FE(62.5=100),PF052537=zf-U11-48K=WD(100=65.9)
C2:
PF0213511=zf-TAZ=PD(14.1=25.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGTTGGAATCCATAGAGCT
R:
CACGTTCCAGACATCAGGGTC
Band lengths:
194-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: