MmuEX0007486 @ mm10
Exon Skipping
Gene
ENSMUSG00000053508 | BC048502
Description
cDNA sequence BC048502 [Source:MGI Symbol;Acc:MGI:2652828]
Coordinates
chr15:103444275-103444942:-
Coord C1 exon
chr15:103444845-103444942
Coord A exon
chr15:103444534-103444654
Coord C2 exon
chr15:103444275-103444376
Length
121 bp
Sequences
Splice sites
3' ss Seq
ACAAGAATTATTCCTTCTAGAAA
3' ss Score
4.08
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GACTAATGGAGTTGGAATCCATAGAGCTATGTCCTTATGATCCAAACCACAGGATACCTGCCAGCAGGTTACAGTACCATCTGGCATCATGCAAAAAG
Seq A exon
AAAAATCCAAAGATAGCTAAAAAGATGGCTAACTGCAAATATAATGCTTGTCATGTGGTCCCAATCAAAAGGCTCAAGGAACATGAGGCCAACTGTATCAACAGGACTGCAGTGGATGATG
Seq C2 exon
AGCCACTTAACCTTCAAAAGATTACTCACCCAGTTTTTGAAGAAAATGAAAACTTCTCCAGTGCTGGGAGTCAATTTCCTGACCCTGATGTCTGGAACGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053508_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
PF052537=zf-U11-48K=WD(100=87.1),PF0213511=zf-TAZ=PU(20.3=41.9)
A:
PF0213511=zf-TAZ=FE(62.5=100),PF052537=zf-U11-48K=WD(100=65.9)
C2:
PF0213511=zf-TAZ=PD(14.1=25.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGTTGGAATCCATAGAGCT
R:
CACGTTCCAGACATCAGGGTC
Band lengths:
194-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types