RnoEX0072805 @ rn6
Exon Skipping
Gene
ENSRNOG00000036830 | RGD1563200
Description
similar to CDNA sequence BC048502 [Source:RGD Symbol;Acc:1563200]
Coordinates
chr7:145060500-145061168:-
Coord C1 exon
chr7:145061071-145061168
Coord A exon
chr7:145060754-145060874
Coord C2 exon
chr7:145060500-145060601
Length
121 bp
Sequences
Splice sites
3' ss Seq
ACAAGAATTATTCCTTCTAGAAA
3' ss Score
4.08
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GACTAATGGAGTTGGAATCTATAGAGCTCTGTCCATATGATCCAAACCACAGGATACCTGCCAGCAGGTTACAGTACCATCTGGCATCATGCAAAAAG
Seq A exon
AAAAATCCAAAGATAGCAAAAAAGATGGCTAACTGCAAATACAATGCCTGTCATGTGGTCCCAATCAAAAGGCTGAAGGAACACGAGGCCAACTGTATCAACAGGACTGCAGTCGATGATG
Seq C2 exon
AGCCACTTAATCTTCAAAAGATTACTCAGCCAAGCTTTGAAGAAAATGAAAACCTCTGCAGTGCTGGGAGTCAGTTTACTGACCCTGATGTCTGGAACGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036830-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.229
Domain overlap (PFAM):
C1:
PF052537=zf-U11-48K=WD(100=87.1),PF0213511=zf-TAZ=PU(17.1=41.9)
A:
PF0213511=zf-TAZ=FE(52.6=100),PF052537=zf-U11-48K=WD(100=65.9)
C2:
PF0213511=zf-TAZ=PD(27.6=60.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTTGGAATCTATAGAGCTCTGT
R:
CCACGTTCCAGACATCAGGGT
Band lengths:
194-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]