MmuEX0007497 @ mm9
Exon Skipping
Gene
ENSMUSG00000045942 | BC049762
Description
cDNA sequence BC049762 [Source:MGI Symbol;Acc:MGI:3039622]
Coordinates
chr11:51067153-51076453:-
Coord C1 exon
chr11:51076279-51076453
Coord A exon
chr11:51067861-51068166
Coord C2 exon
chr11:51067153-51067554
Length
306 bp
Sequences
Splice sites
3' ss Seq
CAGCCCTCCATCCTTTGCAGGTT
3' ss Score
9.2
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GTTCTTAGGTGAACCTGGAAGCCCGCCTTAAGTCTGCGGCGCGCGTCGGGCTCTCGAAGAGTTTTGCTGGGCGTGGCCACGCTGGGTAGGGCCAACCTCTGACCTTTTCCCATCAGCTTAAAGTGGGAAGCTCATCGCACTCCATCTACCAGTCGCCCCTCAACCTCAGCTCCAG
Seq A exon
GTTCTACCGGAAGCTCATGGACTGACTCTGAGATCAGGGTCTTCCTGCTGGAGTGGGAAGTAGTTGAACAGGAAATGGGCCACCCGGGCAGGAAGATCCACAAGAAGACCAGGGCTCTTTGCAGGCGCCTTTACCAGCAGGGCCTGAAGAAGAGCTGGGAAAGCTGTTTCGACCTACTGCTGAGCCTGCGAGATCTGCACAGGACTCTCTGTAATGAAAGACCAGGGATTGAACCCTTGTTTTCTCCTTATGCTGAGGCCCTGTACAGGATCCTGGGCTCCAGTCCCCAGGGAAGCCATGTCCCAG
Seq C2 exon
GTCCTCTCGATGATGGGGCTGGTAACCCTCCACTTTCTGTGTACCCTCAAACTCCCAGGAACCAGCCTTGGGATTATGGCGTCGCTGTTCCTTCTGCACAGCTTCAAGGGAACGCACTGCCAATGATGTCACAGGAGGATTCCCTGTTTCCAAGAGGGGAGCACTGGAACCCCAACCATTCAATGTCAGCTCCAAACTTACTTCCTGACTTTGCCCCAGGAGACCCTAGCTTCCAGCAACCGTGGCCCACCGCGGAATAACACCCTGATACTCAATGAAGACAGGTGGCCTTTCTTTGTTTATTTTCTGAAAAACCTGGGACTGTGAAACCTTGTGGGTGTGGGCATCTTTCTCTACCCCATAAGGAAAAAAATGTGGAGTTAAATAAAGGTCCTTATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045942-'1-3,'1-2,4-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.167 C2=0.849
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAACCTCTGACCTTTTCCC
R:
ATCAGGGTGTTATTCCGCGGT
Band lengths:
354-660
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: