MmuEX0007708 @ mm10
Exon Skipping
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:128096439-128109031:+
Coord C1 exon
chr10:128096439-128096523
Coord A exon
chr10:128096935-128097060
Coord C2 exon
chr10:128108894-128109031
Length
126 bp
Sequences
Splice sites
3' ss Seq
GACCCCCTTCCCCCTCCCAGACC
3' ss Score
9.66
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GATTCTCTCCAACGACCAAGGTCCTGCAGATGACACCAGGAAAGCAGTGATCCAGGCAGGACCAGGTTGTCCCTACAGGACATAG
Seq A exon
ACCCCGCACCCTGCACCCCTCTCCCGCGGGAGTCTCCTCCCTCCTGGCGCCCGGAGCCTGGCCATGTGAACCGCCCGTCCCCCGGGGAGAAGCGAGCCCCGACCGGGCTGGACGCGGTCGCCTCAG
Seq C2 exon
AAATGGAGGCAAACGACCATTTTAACTTTACTGGCCTTCCTCCTGCACCAGCTGCCTCAGGACTGAAACCCTCTCCTTCCTCGGGGGAGGGCCTCTACACTAACGGGTCTCCCATGAACTTCCCCCAGCAAGGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.978
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCTCTCCAACGACCAAGGT
R:
CCTTGCTGGGGGAAGTTCATG
Band lengths:
218-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types