MmuEX0007891 @ mm10
Exon Skipping
Gene
ENSMUSG00000009681 | Bcr
Description
breakpoint cluster region [Source:MGI Symbol;Acc:MGI:88141]
Coordinates
chr10:75168107-75175336:+
Coord C1 exon
chr10:75168107-75168238
Coord A exon
chr10:75173681-75174167
Coord C2 exon
chr10:75175277-75175336
Length
487 bp
Sequences
Splice sites
3' ss Seq
CTTTCACACATTCTTTCAAGATG
3' ss Score
6.53
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GAGTTTGAGATAGAGCTAGAAGGCTCCCAGACCCTGCGGATACTATGTTATGAAAAGTGTTACAACAAAATGAAGATGACGAAGGAAGATGGTGAGAGCGCAGACAAGCTCATGGGGAAAGGCCAGGTCCAG
Seq A exon
ATGCTGCCGGCTCAAAGCGGACTGACCAGTAACACACACGTTACTCAGTGTCTCTAAATTTGGACCACCGGAAGCCACCACTTGAAAAGGAGACTCAACGTAAGAGGAGGCTGTGACTTATCAGAATTCCCGTAACCAATAGACTCTGGAGCAGGAGCTGGTGTTCCCATAGACTGACAGAAAACAAAGTGGAATGTATGGGTGATGGGAAACTCTGACCTTGGCTGGCCCAGCTGTAGGGTGGAGCTTCCCTGAGAGCCTGCTCAAAAGGAGCCAGAGGCCAGGAACTCACCACTGCCCTGCCGTGCGACTTCAGCTCCACAAACAAGCCTCTTGCTGCTCGACCCCCATCGCCATGCAAGGCCTCATTCGGTTTTTCTACCCCAGCCGGGGAAGCCGGAGCCGGATCACCTCTGCTGACAAACAGCTGTGTGCCCGAGGCTCGACCCTGTGGACTCATATCCGATGTCTGGTGTGCAGGGGCAAG
Seq C2 exon
CTGGACCCCCAAACCCTACAGGACAGAGACTGGCAGCGGACTGTCATCGACATGAATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009681_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(44.3=88.6)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000164107fB683
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGAGATAGAGCTAGAAGGCT
R:
TCCATTCATGTCGATGACAGTCC
Band lengths:
191-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types