MmuEX0007891 @ mm9
Exon Skipping
Gene
ENSMUSG00000009681 | Bcr
Description
breakpoint cluster region [Source:MGI Symbol;Acc:MGI:88141]
Coordinates
chr10:74630852-74638081:+
Coord C1 exon
chr10:74630852-74630983
Coord A exon
chr10:74636426-74636912
Coord C2 exon
chr10:74638022-74638081
Length
487 bp
Sequences
Splice sites
3' ss Seq
CTTTCACACATTCTTTCAAGATG
3' ss Score
6.53
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GAGTTTGAGATAGAGCTAGAAGGCTCCCAGACCCTGCGGATACTATGTTATGAAAAGTGTTACAACAAAATGAAGATGACGAAGGAAGATGGTGAGAGCGCAGACAAGCTCATGGGGAAAGGCCAGGTCCAG
Seq A exon
ATGCTGCCGGCTCAAAGCGGACTGACCAGTAACACACACGTTACTCAGTGTCTCTAAATTTGGACCACCGGAAGCCACCACTTGAAAAGGAGACTCAACGTAAGAGGAGGCTGTGACTTATCAGAATTCCCGTAACCAATAGACTCTGGAGCAGGAGCTGGTGTTCCCATAGACTGACAGAAAACAAAGTGGAATGTATGGGTGATGGGAAACTCTGACCTTGGCTGGCCCAGCTGTAGGGTGGAGCTTCCCTGAGAGCCTGCTCAAAAGGAGCCAGAGGCCAGGAACTCACCACTGCCCTGCCGTGCGACTTCAGCTCCACAAACAAGCCTCTTGCTGCTCGACCCCCATCGCCATGCAAGGCCTCATTCGGTTTTTCTACCCCAGCCGGGGAAGCCGGAGCCGGATCACCTCTGCTGACAAACAGCTGTGTGCCCGAGGCTCGACCCTGTGGACTCATATCCGATGTCTGGTGTGCAGGGGCAAG
Seq C2 exon
CTGGACCCCCAAACCCTACAGGACAGAGACTGGCAGCGGACTGTCATCGACATGAATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009681-'19-22,'19-21,20-22
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(44.9=90.9)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGAGATAGAGCTAGAAGGCT
R:
TCCATTCATGTCGATGACAGTCC
Band lengths:
191-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: