MmuEX0008201 @ mm10
Exon Skipping
Gene
ENSMUSG00000024335 | Brd2
Description
bromodomain containing 2 [Source:MGI Symbol;Acc:MGI:99495]
Coordinates
chr17:34118606-34122634:-
Coord C1 exon
chr17:34122567-34122634
Coord A exon
chr17:34120195-34120586
Coord C2 exon
chr17:34118606-34119900
Length
392 bp
Sequences
Splice sites
3' ss Seq
AGTTGCTTTTGCCATCTGACCTT
3' ss Score
-9.65
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GCACACCCTTGCGCATGCGCTATGTGTTTCGTGGGGCTGCGGCAGCCATGCTGAACTCGTACCGAGAG
Seq A exon
CTTGAGAACTGGCTGGTGGTTCCTACTTAAGTCTTGTTTCGAGTCCCAAGACAGCGTAGGGGAGGGGGAGGGGGCGAGACAGCTCCCAAAATGGCTCCTGCCCCTCCTCGGAGGCGTCCGGCTGCGGGGGGGAGGGGAGGGAGGAGGGCTGCAGAGCAGCGCCGCCGCCGCCTCCTCGGCTCGCCCTCCTCCCTGGCGCTGACCGATGGAAGAGGCGCTCCGTGGGGAGGACTCCCAGCCCGATGGGGGCGGGGGGCGTCAGCTCGCCCACGCTGGGGCGAGATGGGGCCAAGGAGCCGTGCGCTGCGCCCGCTCTCCTCACCCTGACGCCGGGAAAGTTTGCCGAGATCGGCTTTTAGGGCATGTGGACGCCTTGTGCGTTCCTAAGGCGG
Seq C2 exon
ATTCTCCACTGCGGCGGCCTCGCAGCCAAGAACCTTTCGCCCGCCCCGCCCGCGCGACCCGTCCCACTCTGCGCCCCGCCCGCGCCGCCAATGGAAAAGCTGCAAATGGCGCGACCAGCCTGCCGCGGGCGACCGGCAGAAATTCGGTGTGTGCAAGCCCGGGAAGGCTCCGTCAGACCTGGAGGTGGGGACAGCGTGTTGCAGGCCCCGGGGAGATGGCGCCTACACGCCGTTCGGCCTCCATCTCTCCCAGGGTTCGCCAAGCCACGGCGCAGCCAATTGGCTCGGAGACATGGCGGGGTGCCTTTTCGCCTTGGCTCTCTGCGGCACTCTGCTGCCGATAATCGACGCCTTGGAACTGGAGTTTGTGACGTCATCCTTCGAGCGGACCAATAGGAAAGGCTCCCGCGAAGAGGCGGGCCTGCCCCCTCGCCTTTGCTTCTCCAGGCGCGTGAGCGGGCGAGCACGCGCGGAGGGGGCGGGGGAGCTCGCGAGCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024335_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGCGCTATGTGTTTCGTG
R:
CCATGTCTCCGAGCCAATTGG
Band lengths:
352-744
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types