MmuEX0008201 @ mm9
Exon Skipping
Gene
ENSMUSG00000024335 | Brd2
Description
bromodomain containing 2 [Source:MGI Symbol;Acc:MGI:99495]
Coordinates
chr17:34255551-34258933:-
Coord C1 exon
chr17:34258806-34258933
Coord A exon
chr17:34257140-34257531
Coord C2 exon
chr17:34255551-34256845
Length
392 bp
Sequences
Splice sites
3' ss Seq
AGTTGCTTTTGCCATCTGACCTT
3' ss Score
-9.65
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
ACTGTGTGGGGGAGGGGAATGGCCAACCTCGTGCCTACATACCCATCGGAGGGCAAAGGGGCGAGGGTGGCTTGTGCCCCATGCACCCGTCACCGGGGGGGGGGGGGGGGACAGGAATCGGGAGCCAG
Seq A exon
CTTGAGAACTGGCTGGTGGTTCCTACTTAAGTCTTGTTTCGAGTCCCAAGACAGCGTAGGGGAGGGGGAGGGGGCGAGACAGCTCCCAAAATGGCTCCTGCCCCTCCTCGGAGGCGTCCGGCTGCGGGGGGGAGGGGAGGGAGGAGGGCTGCAGAGCAGCGCCGCCGCCGCCTCCTCGGCTCGCCCTCCTCCCTGGCGCTGACCGATGGAAGAGGCGCTCCGTGGGGAGGACTCCCAGCCCGATGGGGGCGGGGGGCGTCAGCTCGCCCACGCTGGGGCGAGATGGGGCCAAGGAGCCGTGCGCTGCGCCCGCTCTCCTCACCCTGACGCCGGGAAAGTTTGCCGAGATCGGCTTTTAGGGCATGTGGACGCCTTGTGCGTTCCTAAGGCGG
Seq C2 exon
ATTCTCCACTGCGGCGGCCTCGCAGCCAAGAACCTTTCGCCCGCCCCGCCCGCGCGACCCGTCCCACTCTGCGCCCCGCCCGCGCCGCCAATGGAAAAGCTGCAAATGGCGCGACCAGCCTGCCGCGGGCGACCGGCAGAAATTCGGTGTGTGCAAGCCCGGGAAGGCTCCGTCAGACCTGGAGGTGGGGACAGCGTGTTGCAGGCCCCGGGGAGATGGCGCCTACACGCCGTTCGGCCTCCATCTCTCCCAGGGTTCGCCAAGCCACGGCGCAGCCAATTGGCTCGGAGACATGGCGGGGTGCCTTTTCGCCTTGGCTCTCTGCGGCACTCTGCTGCCGATAATCGACGCCTTGGAACTGGAGTTTGTGACGTCATCCTTCGAGCGGACCAATAGGAAAGGCTCCCGCGAAGAGGCGGGCCTGCCCCCTCGCCTTTGCTTCTCCAGGCGCGTGAGCGGGCGAGCACGCGCGGAGGGGGCGGGGGAGCTCGCGAGCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024335_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTACATACCCATCGGAGG
R:
GAACCCTGGGAGAGATGGAGG
Band lengths:
355-747
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: