MmuEX0008206 @ mm10
Exon Skipping
Gene
ENSMUSG00000026918 | Brd3
Description
bromodomain containing 3 [Source:MGI Symbol;Acc:MGI:1914632]
Coordinates
chr2:27463889-27476007:-
Coord C1 exon
chr2:27475577-27476007
Coord A exon
chr2:27472576-27472614
Coord C2 exon
chr2:27463889-27464193
Length
39 bp
Sequences
Splice sites
3' ss Seq
CTACTGTGCTTGCCCTGTAGGTT
3' ss Score
10.58
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GCTTCTGGAAATCCGCCCACCAGTTCTTATTCCCTGCGTGTGGCTGAGAACGCTAAAGTGAAGGCGCGCGGGCGGGCCAAGGTTCCAGCGTCGCCTCGGGTCCTGGCGGGCAACCTCCCAGCCCCGCCCCCACGCGCCCCTAGGCCGGGCCCGCTGGCGGCCAGGGCGGCCGGGCGGGCGGCCGGGGGCGCGCGGGGCGGGGCACGGCGTGGCGCCGGCGGGGCCGGGACATGTAGTCCGTGCGCCTCGGCCTCCCCTGGGCGGCCCTGGCGCGAGCCCGGGCGCGGACTACGACTCCCGCCAGGCGCCGCGGCGTAGCGCATGAGCCCTGTACAGCTCCGGCGCGTCTATTATGCTGCCGGGGCCGGCGAGCCAAAGAGGAGCCGGCCGCGCGGGCCGGGAGCAGACGGCGCTGGAGCCGCCTAGGCCAA
Seq A exon
GTTATGGCAGAGAGAAGAGAAGTTGACTGAGCTCTTCAG
Seq C2 exon
GTGCCTGATTGGGCCCAGAAATGGGATGCCAAGCCTCCACGAGGAGCGCCTCTTTGAGCTGCTGCTGTGACAGCAAGTGACTAAGCTGCCAGAGGATGTCCACTACAGCGGCTGCCCCCACGGGGATCCCGGCAGTCCCGGGCCCCGTGAACCCTCCCCCACCTGAGGTCTCCAACCCCAGCAAGCCCGGGCGAAAGACTAACCAACTGCAGTACATGCAGAATGTAGTGGTGAAGACACTCTGGAAACATCAGTTTGCCTGGCCTTTCTACCAGCCTGTGGATGCAATCAAGCTGAACCTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026918_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.442
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043920=Bromodomain=PU(33.3=41.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTATTATGCTGCCGGGGC
R:
AGGCTTGGCATCCCATTTCTG
Band lengths:
122-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types