MmuEX0008578 @ mm10
Exon Skipping
Gene
ENSMUSG00000015451 | C4a
Description
complement component 4A (Rodgers blood group) [Source:MGI Symbol;Acc:MGI:98320]
Coordinates
chr17:34815522-34816531:-
Coord C1 exon
chr17:34816392-34816531
Coord A exon
chr17:34816060-34816263
Coord C2 exon
chr17:34815522-34815573
Length
204 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTTTCCTGTCCCCAGGTG
3' ss Score
13.63
5' ss Seq
GAGGTGAAT
5' ss Score
5.37
Exon sequences
Seq C1 exon
GTCTGTGTGTAGCCAAGCCAACTCGTGTTCGAGTGTTCAGAAAATTCCACCTTCACCTGCGCCTGCCCATCTCCGTCCGCCGCTTTGAGCAGCTTGAATTACGGCCTGTTCTCTACAACTATCTGAATGATGACAAGAAC
Seq A exon
GTGAGTGTCCATGTGACCCCAGTGGAGGGCCTGTGCATGGCTGGTGGTGGAATGATGGCCCAGTGGGTGATAGTGCCTGCAGGCTCTGCCCTGCCTGTGGCCTTCTCTGTGGTACCCACAGCTTCTACCAACGTGCCCCTGAAATTGGTGGCTAAAGGGACTTTGGATTCAAGCGATTCTGTGTCTAAGATTCTCCAAATTGAG
Seq C2 exon
AAGGAAGGAGCCATCCACAGAGAAGAGATAGTCTACAACCTCGACCCCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015451_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTGTAGCCAAGCCAACT
R:
TAGGGGGTCGAGGTTGTAGAC
Band lengths:
189-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types