MmuINT0026924 @ mm10
Intron Retention
Gene
ENSMUSG00000015451 | C4a
Description
complement component 4A (Rodgers blood group) [Source:MGI Symbol;Acc:MGI:98320]
Coordinates
chr17:34816060-34816531:-
Coord C1 exon
chr17:34816392-34816531
Coord A exon
chr17:34816264-34816391
Coord C2 exon
chr17:34816060-34816263
Length
128 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGA
5' ss Score
5.13
3' ss Seq
TCTCTGTTTCCTGTCCCCAGGTG
3' ss Score
13.63
Exon sequences
Seq C1 exon
GTCTGTGTGTAGCCAAGCCAACTCGTGTTCGAGTGTTCAGAAAATTCCACCTTCACCTGCGCCTGCCCATCTCCGTCCGCCGCTTTGAGCAGCTTGAATTACGGCCTGTTCTCTACAACTATCTGAATGATGACAAGAAC
Seq A exon
GTGAGACCGTAGGGGAGCCTGAGCATCCAGGGTGGGCATAGGGAGGGGTGCAGCCAGGGACAGGTCAGGTCAGGCAGTGGTCCTGATCACATTAGGGATCGCTGTCCATCTCTGTTTCCTGTCCCCAG
Seq C2 exon
GTGAGTGTCCATGTGACCCCAGTGGAGGGCCTGTGCATGGCTGGTGGTGGAATGATGGCCCAGTGGGTGATAGTGCCTGCAGGCTCTGCCCTGCCTGTGGCCTTCTCTGTGGTACCCACAGCTTCTACCAACGTGCCCCTGAAATTGGTGGCTAAAGGGACTTTGGATTCAAGCGATTCTGTGTCTAAGATTCTCCAAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015451:ENSMUST00000160679:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCAAGCCAACTCGTGTTC
R:
TACCACAGAGAAGGCCACAGG
Band lengths:
245-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types