MmuINT0026924 @ mm9
Intron Retention
Gene
ENSMUSG00000015451 | C4a
Description
complement component 4A (Rodgers blood group) [Source:MGI Symbol;Acc:MGI:98320]
Coordinates
chr17:34953005-34953476:-
Coord C1 exon
chr17:34953337-34953476
Coord A exon
chr17:34953209-34953336
Coord C2 exon
chr17:34953005-34953208
Length
128 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGA
5' ss Score
5.13
3' ss Seq
TCTCTGTTTCCTGTCCCCAGGTG
3' ss Score
13.63
Exon sequences
Seq C1 exon
GTCTGTGTGTAGCCAAGCCAACTCGTGTTCGAGTGTTCAGAAAATTCCACCTTCACCTGCGCCTGCCCATCTCCGTCCGCCGCTTTGAGCAGCTTGAATTACGGCCTGTTCTCTACAACTATCTGAATGATGACAAGAAC
Seq A exon
GTGAGACCGTAGGGGAGCCTGAGCATCCAGGGTGGGCATAGGGAGGGGTGCAGCCAGGGACAGGTCAGGTCAGGCAGTGGTCCTGATCACATTAGGGATCGCTGTCCATCTCTGTTTCCTGTCCCCAG
Seq C2 exon
GTGAGTGTCCATGTGACCCCAGTGGAGGGCCTGTGCATGGCTGGTGGTGGAATGATGGCCCAGTGGGTGATAGTGCCTGCAGGCTCTGCCCTGCCTGTGGCCTTCTCTGTGGTACCCACAGCTTCTACCAACGTGCCCCTGAAATTGGTGGCTAAAGGGACTTTGGATTCAAGCGATTCTGTGTCTAAGATTCTCCAAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015451-C4a:NM_011413:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCAAGCCAACTCGTGTTC
R:
TACCACAGAGAAGGCCACAGG
Band lengths:
245-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: