MmuEX0008666 @ mm10
Exon Skipping
Gene
ENSMUSG00000091586 | Cyp4f17
Description
cytochrome P450, family 4, subfamily f, polypeptide 17 [Source:MGI Symbol;Acc:MGI:3646233]
Coordinates
chr17:32522118-32524272:+
Coord C1 exon
chr17:32522118-32522239
Coord A exon
chr17:32523027-32523127
Coord C2 exon
chr17:32524002-32524272
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTGTATGTTTTGGATTTCAGTTT
3' ss Score
7.49
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GCCAAGTGGCAGCGTCTGACCACCAAAGGAACTGCCTGTCTGGACATGTTGGAACACATCAGTCTGATGACCTTGGACAGCTTGCAGAACTGTGTGTTCAGCTTTGACAGCAACTGTCAGGA
Seq A exon
TTTTAAAGGGAAGTCCATAATGGCAACGAAGTCATGGTGGCTGAAGCAGGAAACTGATCACATTTCAACTGCACTCAGAGAGCAGAGGGCACACACTGCAG
Seq C2 exon
GTCTCCCAGTGAATATATTGCTGCTATTCAGGAGCTCAGCTCCCTCATAGTGAAACGGCACCACCAGCCCTTCCTGTACCTTGACTTCCTGTATTACTGCACTGCTGATGGGCGGCGCTTCCGCAAGGCCTGCGACCTGGTGCACAACTTCACAGATGCTGTCATCAGGGAGAGACGGCGCACTCTCTCCAGCCAAAATCTTGATGAGTTCCTGAAGTCGAAGACTAAGTCTAAAACCCTGGACTTCATCGATGTGCTCTTATTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091586_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(19.6=100)
A:
PF0006717=p450=FE(16.7=100)
C2:
PF0006717=p450=FE(19.4=100)
Main Inclusion Isoform:
ENSMUST00000165999fB751
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTGCCTGTCTGGACATG
R:
TGTGAAGTTGTGCACCAGGTC
Band lengths:
249-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types