MmuINT0045413 @ mm10
Intron Retention
Gene
ENSMUSG00000091586 | Cyp4f17
Description
cytochrome P450, family 4, subfamily f, polypeptide 17 [Source:MGI Symbol;Acc:MGI:3646233]
Coordinates
chr17:32522118-32524272:+
Coord C1 exon
chr17:32522118-32522239
Coord A exon
chr17:32522240-32524001
Coord C2 exon
chr17:32524002-32524272
Length
1762 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
CTCTCTGGCCTGCCTTGCAGGTC
3' ss Score
11.57
Exon sequences
Seq C1 exon
GCCAAGTGGCAGCGTCTGACCACCAAAGGAACTGCCTGTCTGGACATGTTGGAACACATCAGTCTGATGACCTTGGACAGCTTGCAGAACTGTGTGTTCAGCTTTGACAGCAACTGTCAGGA
Seq A exon
GTGAGTCACGATCTTTGCCTGGGAACCTGGGCATGGATGAAAGGAGCAGGAGGTTGGGAAGGAGTGGGTCCCCATCAGCCATAGCACACCAGGACCAGCCGTCCCAGGATGCTAAGGAGCTGGGGAGCAGGGTCTTCAGCGGTGGTGAGTACCGAATGGTCTGGGAGATGGTTGCCAGGGACAGCACATTTATTGAGATAGCGGGCCTAGCTTATACAGGTAGAGTCAGGGGGTAGAGAGGGAAAAAGACAAGGGAGGAAGTGCTGCAGCAGGGGTAGGGACCTTTCAAGCATATCAGCTAGGTTAGCAGGCTGCCAATCACATGATTTCTGAGAAGCCAACTCGCTGCCTGGGAAACAGAAGTTTAACTGGCGTTATCATGATGTAGCCTTTGTCTCTAAGGAGTTTGAGTAGGCCCAAGCCTGGTTTGGGTAAGGAGCAGCCCCACTCCTGCTGTGCTCTCTGAGAGATGTCTGGGGTCTGGGCAGCACTCTGCATGCATATTCACACATGTATACCATTACATGTACATCAGGCAACTACCTGAACGTGTACATGGGAGAAACACACACAGTTTATACACATACTAAAAAAAGGTCTGATTTATTTAATCTAAGCTGATAACTAAGGTTAGTAATCACGGGGAGTTAAAAGTACCTCGCTCTTTCTCTCTCTAACATGGAGTTAGAGTGCTCCACCCTCATTGCCTTTCTGCGTTAGTTAAGTTTCTGTTGCTGTGATGAAATACTACGATCATAGAGCAGAAACTGTATGTTTTGGATTTCAGTTTTAAAGGGAAGTCCATAATGGCAACGAAGTCATGGTGGCTGAAGCAGGAAACTGATCACATTTCAACTGCACTCAGAGAGCAGAGGGCACACACTGCAGGTGGGGCTATACAGTCTCAAAGTCCACTCCTCCAAAAAGGCTCCCATCCTGAAAGTTCTATAAGCTCCCCAAAGTTTCATCAAATGGGGACCAAATGTTTCAATACATGAGCCTCTAGAACATACTTCTCCTCAAACTAGCTCCCTTCTTCCCGTCCTTGCTTCCGTCCTTGCTTGCTTCCTTCCTTCTTTCCTTCCTCCCTTTCTTCCTTCCTTCTCTCCTTCATTCCAGAATGGTATTTTACTATGCTGTCTAGGCTAGTTTGGAACTGAGTAGGTACTTCAGGGTAGATTTGAATTCATGACCCTTCTGCTTCCATTGCCCAAGTGTTAGGACCACAGTCACAAGTCACCATGTCCAGCTAGTGGACAGATCTTAAGACTGTTGTATACCTAGCAAGAAGGGCCCAAATGGAGATTCTCAGTTTTCCAACTGGGAGTCATAGTCACAGCTGAGATTGGACCCAGTAGAGGAGTGTCATGCAGTCACAGAATGCAAGGGACCTGAAGAGGAGGACAGGAACTTGATACAGAAAACAGGACAGAGTCGTAAGAAATCAGGAAAGAAAAGATGGGACAGATGCTGAATGAAAGGGAGGTAGGAACCGCGCCGTATCTCCCTTCCCATCCCGTATCTCCCTTCCCATCCCGTATCTCCCTTCCCATCCCGGAGCACAAGGCTACTCACGGGAAGCGAGATAGGAACCGTGCCGTATCTTCCTTCCCATCCCGGAGCACAAGGCTACTCACGGGAAGCAGGAAGGACAGAGAGGTTTGCTTAGCCTGATCCGATAAATCCTGGTCCTGGAACTCTGGATGAAACTTCTCTGAGGTTTCGTGTGTGTCACATCTCTTCTCTCTGGCCTGCCTTGCAG
Seq C2 exon
GTCTCCCAGTGAATATATTGCTGCTATTCAGGAGCTCAGCTCCCTCATAGTGAAACGGCACCACCAGCCCTTCCTGTACCTTGACTTCCTGTATTACTGCACTGCTGATGGGCGGCGCTTCCGCAAGGCCTGCGACCTGGTGCACAACTTCACAGATGCTGTCATCAGGGAGAGACGGCGCACTCTCTCCAGCCAAAATCTTGATGAGTTCCTGAAGTCGAAGACTAAGTCTAAAACCCTGGACTTCATCGATGTGCTCTTATTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091586:ENSMUST00000165999:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(19.6=100)
A:
NA
C2:
PF0006717=p450=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTGCCTGTCTGGACATG
R:
GCACATCGATGAAGTCCAGGG
Band lengths:
352-2114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types