BtaINT0046316 @ bosTau6
Intron Retention
Gene
ENSBTAG00000048257 | CYP4F3
Description
Bos taurus cytochrome P450, family 4, subfamily F, polypeptide 3 (CYP4F3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046391]
Coordinates
chr7:8600956-8602317:-
Coord C1 exon
chr7:8602196-8602317
Coord A exon
chr7:8601227-8602195
Coord C2 exon
chr7:8600956-8601226
Length
969 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
TCTCTGGTCTGACCCTGTAGGAA
3' ss Score
8.92
Exon sequences
Seq C1 exon
GCCAAGTGGCAACGCCTGGCCTTAGAGGGCAGCACTCGTCTGGACATGTTTGAACACATCAGCCTCATGACCCTGGACAGTCTGCAGAAATGCGTCTTCAGTTATGACAGCAATTGCCAGGA
Seq A exon
GTGAGTCTCAGCCCGGGTCCTGGGGAGCATGAAGTATAGATCCATGGGAGTAGATGGGTCAGGGAGGACTGACCAAGGTAAACAGAAGGGATCTTCTTGGAGGAAGTAGGTCAGAGCTGGACACTGAAGGACAGGGAAGGGAAAGAGAAGGAGCGATTCTTGCAGGTAGACAGAAATGTTTGATAAAGGCCATGAGGCCAGGATAAACAGAGCCTGTGTAGCTTGGGGGAGACATCTTGAGGTTGGAGGAATGGGCAGAGTTCTATCTTCAGGACATTCTGAAGCCAGACAAAGAGGATATGAACTTCATCCTGAGGTTTCCTGGGAGCCATGGAAGATGTTTGGGTACATGAGGATCTTGGTCAAAGTTGACTTGGACATATGACTGGAGAGAAGACTGATTGTTGTGTAGACATGAGATGTGAGGAGACCACAGAGGGGGGGAAGTTTGAGCTTGGTGGAGAAAATGGGGCAGATTTGGGGGAAACTGAGAAAGACATTGGCAGGCCCAGATATTGTGTGGGAGGGAGGAGAGATGAGGGTGATTCCCATGCTCTGCCCTGATGTCCAGGACATGAGGAGCTCACAGAGATGGGGGTCAGAGAGAGAAATGTGATTGAATGGGATGTGGTCCTGGGTAACTGACCAGAAGTGCTCCTGCAGTATGAGATCATGAAAGGAGGCAATAGCTTACAACATCTGAAATCCAGAAGCACACAGCTATTGATATCTCCTATCAGGGTTCCCAAGACCCCCTATTAGGAATCGGAGTTTCTAAGAAGAGATGGCCCACAGATATACAGGACTTCTTTTTTTTGGCCATGCCATGTAGCTTGTGGGATCTTAGTTCCCCAACTGGGGATCCAACCTGTGCCCCCTGCAGTGGAAGCATTAAAGCCCTAGCCACTGGACCACCAGGGAAGTCCCACAGGACTGCTTCTTAAGGCTTTCTCTGGTCTGACCCTGTAG
Seq C2 exon
GAAACCCAGCGAATATATTGCCGCCATCTTGGAGCTCAGTGCCCTGGTGATGAAACGAATTAAGCACATCTTCCTGCATGTGGACTTCCTGTACTACCTCACCCGCGATGGGCAGCGCTTCTACAGGGCCTGCCGCCTGGTGCACGACTTCACAGATGCCATCATCCAGAAGAGGCGTCGTACTCTAATCAGTCAGGGTTCCCAAGAATTCCTCAAAACCAAGACTAAGGCTAAGACTTTGGACTTCATCGATGTGCTCCTGCTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048257:ENSBTAT00000036384:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(8.6=100)
A:
NA
C2:
PF0006717=p450=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACTCGTCTGGACATGTT
R:
GCAGGAGCACATCGATGAAGT
Band lengths:
356-1325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]