MmuINT0045413 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr17:32659063-32661217:+
Coord C1 exon
chr17:32659063-32659184
Coord A exon
chr17:32659185-32660946
Coord C2 exon
chr17:32660947-32661217
Length
1762 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
CTCTCTGGCCTGCCTTGCAGGTC
3' ss Score
11.57
Exon sequences
Seq C1 exon
GCCAAGTGGCAGCGTCTGACCACCAAAGGAACTGCCTGTCTGGACATGTTGGAACACATCAGTCTGATGACCTTGGACAGCTTGCAGAACTGTGTGTTCAGCTTTGACAGCAACTGTCAGGA
Seq A exon
GTGAGTCACGATCTTTGCCTGGGAACCTGGGCATGGATGAAAGGAGCAGGAGGTTGGGAAGGAGTGGGTCCCCATCAGCCATAGCACACCAGGACCAGCCGTCCCAGGATGCTAAGGAGCTGGGGAGCAGGGTCTTCAGCGGTGGTGAGTACCGAATGGTCTGGGAGATGGTTGCCAGGGACAGCACATTTATTGAGATAGCGGGCCTAGCTTATACAGGTAGAGTCAGGGGGTAGAGAGGGAAAAAGACAAGGGAGGAAGTGCTGCAGCAGGGGTAGGGACCTTTCAAGCATATCAGCTAGGTTAGCAGGCTGCCAATCACATGATTTCTGAGAAGCCAACTCGCTGCCTGGGAAACAGAAGTTTAACTGGCGTTATCATGATGTAGCCTTTGTCTCTAAGGAGTTTGAGTAGGCCCAAGCCTGGTTTGGGTAAGGAGCAGCCCCACTCCTGCTGTGCTCTCTGAGAGATGTCTGGGGTCTGGGCAGCACTCTGCATGCATATTCACACATGTATACCATTACATGTACATCAGGCAACTACCTGAACGTGTACATGGGAGAAACACACACAGTTTATACACATACTAAAAAAAGGTCTGATTTATTTAATCTAAGCTGATAACTAAGGTTAGTAATCACGGGGAGTTAAAAGTACCTCGCTCTTTCTCTCTCTAACATGGAGTTAGAGTGCTCCACCCTCATTGCCTTTCTGCGTTAGTTAAGTTTCTGTTGCTGTGATGAAATACTACGATCATAGAGCAGAAACTGTATGTTTTGGATTTCAGTTTTAAAGGGAAGTCCATAATGGCAACGAAGTCATGGTGGCTGAAGCAGGAAACTGATCACATTTCAACTGCACTCAGAGAGCAGAGGGCACACACTGCAGGTGGGGCTATACAGTCTCAAAGTCCACTCCTCCAAAAAGGCTCCCATCCTGAAAGTTCTATAAGCTCCCCAAAGTTTCATCAAATGGGGACCAAATGTTTCAATACATGAGCCTCTAGAACATACTTCTCCTCAAACTAGCTCCCTTCTTCCCGTCCTTGCTTCCGTCCTTGCTTGCTTCCTTCCTTCTTTCCTTCCTCCCTTTCTTCCTTCCTTCTCTCCTTCATTCCAGAATGGTATTTTACTATGCTGTCTAGGCTAGTTTGGAACTGAGTAGGTACTTCAGGGTAGATTTGAATTCATGACCCTTCTGCTTCCATTGCCCAAGTGTTAGGACCACAGTCACAAGTCACCATGTCCAGCTAGTGGACAGATCTTAAGACTGTTGTATACCTAGCAAGAAGGGCCCAAATGGAGATTCTCAGTTTTCCAACTGGGAGTCATAGTCACAGCTGAGATTGGACCCAGTAGAGGAGTGTCATGCAGTCACAGAATGCAAGGGACCTGAAGAGGAGGACAGGAACTTGATACAGAAAACAGGACAGAGTCGTAAGAAATCAGGAAAGAAAAGATGGGACAGATGCTGAATGAAAGGGAGGTAGGAACCGCGCCGTATCTCCCTTCCCATCCCGTATCTCCCTTCCCATCCCGTATCTCCCTTCCCATCCCGGAGCACAAGGCTACTCACGGGAAGCGAGATAGGAACCGTGCCGTATCTTCCTTCCCATCCCGGAGCACAAGGCTACTCACGGGAAGCAGGAAGGACAGAGAGGTTTGCTTAGCCTGATCCGATAAATCCTGGTCCTGGAACTCTGGATGAAACTTCTCTGAGGTTTCGTGTGTGTCACATCTCTTCTCTCTGGCCTGCCTTGCAG
Seq C2 exon
GTCTCCCAGTGAATATATTGCTGCTATTCAGGAGCTCAGCTCCCTCATAGTGAAACGGCACCACCAGCCCTTCCTGTACCTTGACTTCCTGTATTACTGCACTGCTGATGGGCGGCGCTTCCGCAAGGCCTGCGACCTGGTGCACAACTTCACAGATGCTGTCATCAGGGAGAGACGGCGCACTCTCTCCAGCCAAAATCTTGATGAGTTCCTGAAGTCGAAGACTAAGTCTAAAACCCTGGACTTCATCGATGTGCTCTTATTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
-Cyp4f17:NM_001101445:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTGCCTGTCTGGACATG
R:
GCACATCGATGAAGTCCAGGG
Band lengths:
352-2114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: