MmuEX0008829 @ mm9
Exon Skipping
Gene
ENSMUSG00000041460 | Cacna2d4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:MGI Symbol;Acc:MGI:2442632]
Coordinates
chr6:119297152-119298856:+
Coord C1 exon
chr6:119297152-119297269
Coord A exon
chr6:119298209-119298295
Coord C2 exon
chr6:119298744-119298856
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTGATCCTTTCCATCTCTAGTCT
3' ss Score
9.22
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
CCCACAAGCACAAGAAGCAGGACCTGCTGCACCCCTGTGACACAGAGTACCCAGTGTTCGTGCATCAGACGGCCATCCAGGAAGCCAATGGCATCATCGAGTGTGGGGGCTGCCAGAA
Seq A exon
TCTTAACTGCAGACAAGCTTCTAGCCTGTTTTGTCCTGTGCACAATGGGAACTATACCAAGTTCACATAATGGTGTAATGGCCACAT
Seq C2 exon
GACATTCGTGATGCAACAGATTCCCCGAAGCAACCTGCTCCTGCTCGTGACAGACCGCACCTGTGACTGCAGCGCCCACTCTCCCATCCTCCAGGAGGCCACAGAAGTCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041460-'34-35,'34-34,35-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGTACCCAGTGTTCGTGC
R:
CTCCTGGAGGATGGGAGAGTG
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: