MmuEX0008829 @ mm10
Exon Skipping
Gene
ENSMUSG00000041460 | Cacna2d4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:MGI Symbol;Acc:MGI:2442632]
Coordinates
chr6:119347134-119348838:+
Coord C1 exon
chr6:119347134-119347251
Coord A exon
chr6:119348191-119348277
Coord C2 exon
chr6:119348726-119348838
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTGATCCTTTCCATCTCTAGTCT
3' ss Score
9.22
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
CCCACAAGCACAAGAAGCAGGACCTGCTGCACCCCTGTGACACAGAGTACCCAGTGTTCGTGCATCAGACGGCCATCCAGGAAGCCAATGGCATCATCGAGTGTGGGGGCTGCCAGAA
Seq A exon
TCTTAACTGCAGACAAGCTTCTAGCCTGTTTTGTCCTGTGCACAATGGGAACTATACCAAGTTCACATAATGGTGTAATGGCCACAT
Seq C2 exon
GACATTCGTGATGCAACAGATTCCCCGAAGCAACCTGCTCCTGCTCGTGACAGACCGCACCTGTGACTGCAGCGCCCACTCTCCCATCCTCCAGGAGGCCACAGAAGTCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041460_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000037434fB769
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGTACCCAGTGTTCGTGC
R:
CTCCTGGAGGATGGGAGAGTG
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types