MmuEX0009590 @ mm10
Exon Skipping
Gene
ENSMUSG00000047696 | Ccdc144b
Description
coiled-coil domain containing 144B [Source:MGI Symbol;Acc:MGI:2681852]
Coordinates
chr3:36007244-36017896:-
Coord C1 exon
chr3:36017674-36017896
Coord A exon
chr3:36010599-36010643
Coord C2 exon
chr3:36007244-36007963
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTGACTGCTGTCCACTGCAGAAA
3' ss Score
9.06
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
AACAGATGAAAGACTGGCAGAGGTCAAAACCAAACTTCTCCTGGAGAGAAAACAGTACCGAGCTTCCCAATACAGCATGGTGGACACAAGGCCTGCCCTGGAGCCCACTTGTCCTAGAGACAGTAATAAATTTTTCATTCCAAGAAGTTTCTCAGGCGAAATCATGCTTCCTAAGTCAGACCTCTGGCACTCAATTGAGACCATGGAAAATTGCAAGACCAAG
Seq A exon
AAAGAAGCTTCTCTGATGGATGCTGAGACGAGCCCAGGTCCACAG
Seq C2 exon
TTCCTGATGAATCTGAATCTGGACTCCGTAGAACTTCTCCTCTAGAGTTTACTCATCTATGAAGCTAGAGTCTTCCTAGACAACCTATCAGAACATGTAGAGATTTTAATATAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATTTGAAATATAAAATTTACTTTAATATGTTACTTGGCTATTCATAAAATTTTTTGATTATTTTCCAATATATAGGTTAAACATTAAAGAATATTTTTGTATCAGAGATTATGAAAGAAAGATGAAATTTTAAGACCTGTAAGACATATAAAGTACTCAGAAATTGCTGGTTGTTTGTGAGCCTAGAGGCTGCCTGGGGCTGAGAACAAAGAAAAACAAACCCGGGTATGCCCTGTAGTTAAAGCATTCCTGAGAACAGCTTGACCATAAAGATAAAGAGGAATGTGAGGACATAACAGGGCTATCTGAACTGAGTCAGCATTGATAAACATCCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047696_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PD(50.9=73.3)
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCCACTTGTCCTAGAGA
R:
GTCCAGATTCAGATTCATCAGGA
Band lengths:
148-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types