MmuEX0009590 @ mm9
Exon Skipping
Gene
ENSMUSG00000047696 | Ccdc144b
Description
coiled-coil domain containing 144B [Source:MGI Symbol;Acc:MGI:2681852]
Coordinates
chr3:35906169-35916818:-
Coord C1 exon
chr3:35916596-35916818
Coord A exon
chr3:35909521-35909623
Coord C2 exon
chr3:35906169-35906885
Length
103 bp
Sequences
Splice sites
3' ss Seq
ACTCAGTCTCTTATTCTTAGGCT
3' ss Score
5.75
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
AACAGATGAAAGACTGGCAGAGGTCAAAACCAAACTTCTCCTGGAGAGAAAACAGTACCGAGCTTCCCAATACAGCATGGTGGACACAAGGCCTGCCCTGGAGCCCACTTGTCCTAGAGACAGTAATAAATTTTTCATTCCAAGAAGTTTCTCAGGCGAAATCATGCTTCCTAAGTCAGACCTCTGGCACTCAATTGAGACCATGGAAAATTGCAAGACCAAG
Seq A exon
GCTTCTGACCAGTTGTGCATCTGTCTCTCATCTCTCCATTGACTGCTGTCCACTGCAGAAAGAAGCTTCTCTGATGGATGCTGAGACGAGCCCAGGTCCACAG
Seq C2 exon
TTCCTGATGAATCTGAATCTGGACTCCGTAGAACTTCTCCTCTAGAGTTTACTCATCTATGAAGCTAGAGTCTTCCTAGACAACCTATCAGAACATGTAGAGATTTTAATATAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATTTGAAATATAAAATTTACTTTAATATGTTACTTGGCTATTCATAAAATTTTTTGATTATTTTCCAATATATAGGTTAAACATTAAAGAATATTTTTGTATCAGAGATTATGAAAGAAAGATGAAATTTTAAGACCTGTAAGACATATAAAGTACTCAGAAATTGCTGGTTGTTTGTGAGCCTAGAGGCTGCCTGGGGCTGAGAACAAAGAAAAACAAACCCGGGTATGCCCTGTAGTTAAAGCATTCCTGAGAACAGCTTGACCATAAAGATAAAGAGGAATGTGAGGACATAACAGGGCTATCTGAACTGAGTCAGCATTGATAAACATCCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047696-'10-11,'10-10,13-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PD(50.9=73.3)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGAAGTTTCTCAGGCGA
R:
ACACACACACACACACACACA
Band lengths:
243-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: