MmuEX0010223 @ mm9
Exon Skipping
Gene
ENSMUSG00000016493 | Cd46
Description
CD46 antigen, complement regulatory protein [Source:MGI Symbol;Acc:MGI:1203290]
Coordinates
chr1:196903848-196911629:-
Coord C1 exon
chr1:196911527-196911629
Coord A exon
chr1:196908776-196908973
Coord C2 exon
chr1:196903848-196904030
Length
198 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTTCTTTTTATAAAGAGA
3' ss Score
5.09
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
AAGTTCAATGTACTATGTTACAAGACCCTTCATTTGGCAAAGTATACTACATAGATGGCAGCTTTTCATGGGGTGCTCGAGCTAAATTTACTTGTATGGAAGG
Seq A exon
AGATTTATTGTTTACCACCTCCAAAAATAAAAAATGGAACACATACCCTTACTGATATAAATGTATTCAAATACCATGAAGCAGTAAGTTACAGTTGTGATCCTACCCCAGGGCCAGATAAGTTTTCCCTTGTTGGAACAAGCATGATATTCTGTGCTGGCCATAACACCTGGAGTAACAGCCCTCCGGAGTGTAAAG
Seq C2 exon
TGGTAAAATGTCCAAATCCAGTACTACAAAATGGAAGACTGATATCAGGAGCTGGCGAAATATTTTCCTATCAATCAACAGTGATGTTTGAGTGTTTGCAAGGATTTTACATGGAAGGCAGTAGCATGGTGATCTGTAGTGCTAATAACTCTTGGGAGCCATCTATCCCAAAATGTCTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016493_MULTIEX1-2/7=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(51.7=88.6)
A:
PF0008415=Sushi=WD(100=92.5)
C2:
PF0008415=Sushi=WD(100=90.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGACCCTTCATTTGGCAA
R:
GGATAGATGGCTCCCAAGAGT
Band lengths:
252-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types