RnoEX0018689 @ rn6
Exon Skipping
Gene
ENSRNOG00000007917 | Cd46
Description
CD46 molecule [Source:RGD Symbol;Acc:3061]
Coordinates
chr13:113805774-113811584:-
Coord C1 exon
chr13:113811496-113811584
Coord A exon
chr13:113810417-113810614
Coord C2 exon
chr13:113805774-113805956
Length
198 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTCCTTTTTATAAAGAAG
3' ss Score
4.22
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TTATTACATGGTTGGTATGTCAGTTCTACAGTGTGAGCTTAATGGCAACGGTGATGCATTCTGGAATGGCCATCCCCCAAGTTGTAAAA
Seq A exon
AAGTCTATTGTTTACCACCTCCAAAAATAAAAAATGGAACACACACCTTTACTGATATAAAAGTATTCAAATACCATGAAGCAGTAATTTACAGTTGTGATCCTAACCCAGGGCCAGATAAGTTTTCCCTTGTTGGACCGAGCATGCTATTCTGTGCTGGCCATAACACCTGGAGTAGCGACCCTCCGGAGTGTAAAG
Seq C2 exon
TGGTAAAATGTCCATTTCCAGTGCTACAAAATGGAAGACAGATATCAAGAACTGAAAAAAAATTTTCCTACCAAGCACTAGTGCTGTTTCAGTGTTTGGAGGGATTTTACATGGAGGGCAGTAGCATGGTGGTCTGTGGTGCTAAGAGCTCTTGGGAGCCCTCTATCCCACAATGTCTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007917_MULTIEX1-1/4=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(46.7=90.3)
A:
PF0008415=Sushi=WD(100=92.5)
C2:
PF0008415=Sushi=WD(100=90.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGTTCTACAGTGTGAGCT
R:
CATTGTGGGATAGAGGGCTCC
Band lengths:
247-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]