BtaEX6070848 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr16:77497572-77508275:-
Coord C1 exon
chr16:77508190-77508275
Coord A exon
chr16:77507101-77507298
Coord C2 exon
chr16:77497572-77497754
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTCTTTTTAAGAGA
3' ss Score
10.06
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
TTATTACTTACTGGGGACAAATATTTCTTATTGTGAAGTTTCTGGAACTGGTGTGAACTGGAGTGATAATCCTCCAACATGTGAAA
Seq A exon
AGATTTTGTGTCAACCGCCTCCAGAAATTCAAAATGGAAAATACACCAATAGCCACAAGGATGTATTTGAATACAATGAAGTAGTAACTTATAGTTGTGATCCTTCAAATGGGCCAGATGAATATTCCCTTGTTGGAGAGAGCAAGCTTACTTGTATTGGAAATGGTGAATGGAGTAGTCAACCCCCTCAGTGTAAAG
Seq C2 exon
TGGTCAAATGTGTATATCCAGCCATTGAACATGGAACGATAGTCTCAGGATTTGGACCAAAATATTACTACAAAGCGACGGTTGTACTTAAATGCAATGAGGGTTTTAACCTTTATGGCAACAGTGTAGTTGTCTGTGGTGAGAACAGTACTTGGGAGCCCGAGCTACCAAAGTGTATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005397-'9-11,'9-7,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.006
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(45.8=90.0)
A:
PF0008415=Sushi=WD(100=92.5)
C2:
PF0008415=Sushi=WD(100=90.3),PF0248011=Herpes_gE=PU(12.3=16.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGGGACAAATATTTCTTATTGTG
R:
ATACACTTTGGTAGCTCGGGC
Band lengths:
255-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]