MmuEX0010250 @ mm9
Exon Skipping
Gene
ENSMUSG00000024670 | Cd6
Description
CD6 antigen [Source:MGI Symbol;Acc:MGI:103566]
Coordinates
chr19:10865872-10869194:-
Coord C1 exon
chr19:10869054-10869194
Coord A exon
chr19:10868632-10868727
Coord C2 exon
chr19:10865872-10865943
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTCTGCCTCCCTCCCCCCAGCCC
3' ss Score
10.66
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AATCTTCTGTGCCGGTGAGCGTGAAGGATAAGGACTCACAAGGGCTGACACTTCTCATTCTCTGTATTGTCCTGGGAATTCTCCTCCTCGTCTCCACCATCTTCATAGTTATTCTTCTCTTGAGAGCCAAAGGACAATACG
Seq A exon
CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG
Seq C2 exon
ATTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCCTTGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024670_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.114 C2=0.960
Domain overlap (PFAM):
C1:
PF054546=DAG1=PD(59.2=93.8)
A:
PF054546=DAG1=PD(16.4=57.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGAGCGTGAAGGATAAGG
R:
TGTTCTGCTGAGCTTCCTCCT
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: