RnoEX0018728 @ rn6
Exon Skipping
Gene
ENSRNOG00000020884 | Cd6
Description
Cd6 molecule [Source:RGD Symbol;Acc:2312]
Coordinates
chr1:226850507-226853982:-
Coord C1 exon
chr1:226853842-226853982
Coord A exon
chr1:226853439-226853534
Coord C2 exon
chr1:226850507-226850578
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTCTGCCTCCCTCCCTCAGCCC
3' ss Score
10.03
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AATCTTCTGTGCCTGTGAGCGTGAAGGATAAGGACTCTCAAAATTTGACACTTCTCATTCCCTGCATTGTCCTGGGAATTCTCCTTCTTGTCTCCCTCATCTTCATAGTTTTTCTTCTCTTGAAAGCCAAAGGACAATATG
Seq A exon
CCCTCCCTACTTCAGTGAACCACCAGCAACTGTCCACTGCCAATCCAGCAGGGATCAACAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG
Seq C2 exon
ATTCCCAGAGGCACCGGGTCACAGAGGAAGAAGCCCAACAGAACAGGTTCCGGATGCCACCCTTGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020884_MULTIEX1-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.364 C2=0.987
Domain overlap (PFAM):
C1:
PF054546=DAG1=FE(30.5=100),PF151021=TMEM154=FE(47.0=100)
A:
PF054546=DAG1=FE(20.8=100),PF151021=TMEM154=PD(16.0=48.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTTCTGTGCCTGTGAGCG
R:
CTTCTTCCTCTGTGACCCGGT
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]