MmuEX0010366 @ mm10
Exon Skipping
Gene
ENSMUSG00000044201 | Cdc25c
Description
cell division cycle 25C [Source:MGI Symbol;Acc:MGI:88350]
Coordinates
chr18:34750738-34751533:-
Coord C1 exon
chr18:34751314-34751533
Coord A exon
chr18:34751114-34751211
Coord C2 exon
chr18:34750738-34750963
Length
98 bp
Sequences
Splice sites
3' ss Seq
AGCCTCATCTTGTTTGTTAGATC
3' ss Score
5.71
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GGCTTTGCCTTCAGGCCATCTCCGGAGAGAAGAAGCAAAGCTGAACCTCGGGCCACGTAGATGCAATTTTAACCCGAAGAATCGCTTCTGTTCCTCAGATCCCTTGTCATTCTGTGGAGTCTTCGCTTACGTCCAGTCCTGCAGGAGGTTTTTTGTTTTTTTTTTGTTTTTTTTTTGTTTTTTTAATCTCACAAAATTCAAGTCGGCCTTTAAACTTAAG
Seq A exon
ATCGGTTTCTTCTGGTCAAGAGTGTGAAACTGCGTGGTCCGGATCAAGCCAGTGTTCTCTTCGTTCCACCTTTGAAGTCCTGAGCTTGCCTGACGTCT
Seq C2 exon
ATAGCCCCACCTCCCTCGGTGAAGACTCTGAAGTCATGTCTACAGGACCTATCCCACCTGCAAGTGAAGAGGGAAGTTTTGTTTCAGCACCCAGTTTTAGGTCCAAACAAAGGAAGATATTACACCTACTTTTGGAGAGAAACACTTCTTTTACCATCCGTTCAGATTTCCCTGAATCTCCGAAAGACAAACTCCACGACTCGGCAAACCTAAGCATTCTGTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044201_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.562
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCGCTTACGTCCAGTCCT
R:
TCACTTGCAGGTGGGATAGGT
Band lengths:
168-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types