MmuINT0032754 @ mm10
Intron Retention
Gene
ENSMUSG00000044201 | Cdc25c
Description
cell division cycle 25C [Source:MGI Symbol;Acc:MGI:88350]
Coordinates
chr18:34751114-34751533:-
Coord C1 exon
chr18:34751314-34751533
Coord A exon
chr18:34751212-34751313
Coord C2 exon
chr18:34751114-34751211
Length
102 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
AGCCTCATCTTGTTTGTTAGATC
3' ss Score
5.71
Exon sequences
Seq C1 exon
GGCTTTGCCTTCAGGCCATCTCCGGAGAGAAGAAGCAAAGCTGAACCTCGGGCCACGTAGATGCAATTTTAACCCGAAGAATCGCTTCTGTTCCTCAGATCCCTTGTCATTCTGTGGAGTCTTCGCTTACGTCCAGTCCTGCAGGAGGTTTTTTGTTTTTTTTTTGTTTTTTTTTTGTTTTTTTAATCTCACAAAATTCAAGTCGGCCTTTAAACTTAAG
Seq A exon
GTAAGCCGGGAACTGTGTCCATCCCGGAATCTAGGATACCCGATTGTCCCTGCAGGGTTCGTTCGGGACCCGAGATCCGTATAGCCTCATCTTGTTTGTTAG
Seq C2 exon
ATCGGTTTCTTCTGGTCAAGAGTGTGAAACTGCGTGGTCCGGATCAAGCCAGTGTTCTCTTCGTTCCACCTTTGAAGTCCTGAGCTTGCCTGACGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044201:ENSMUST00000060710:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCAAAGCTGAACCTCGG
R:
GAGAACACTGGCTTGATCCGG
Band lengths:
249-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types