BtaINT0034928 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005293 | CDC25C
Description
Bos taurus cell division cycle 25 homolog C (S. pombe) (CDC25C), mRNA. [Source:RefSeq mRNA;Acc:NM_001097996]
Coordinates
chr7:51343151-51344138:-
Coord C1 exon
chr7:51343938-51344138
Coord A exon
chr7:51343360-51343937
Coord C2 exon
chr7:51343151-51343359
Length
578 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGC
5' ss Score
8.99
3' ss Seq
TAGGTTTTGTTTTTTCTTAGAAC
3' ss Score
6.94
Exon sequences
Seq C1 exon
ACTCTTAGGCTGTAACTTCAACCTGCTGAGAGAAGCGGCGAAACCCAAACCTGGCCTATCTGGTCGAGAGGCATAGATGTATGGTTAAATCGCCTCCGTTACCTCAGATTTTTCTTTAGTTCTTCTAGAATCTTCGCTTGTGTCTGATTTCCCTGCTTACTTTCATTCCTCCTGAAGGCAAGTCTCGGACTCAAACCTGCG
Seq A exon
GTAAGCCTAGAGCTGTGCCCTCCACAGAATCACGGGCCTCGCGAACGGTGTTTAGGGGGACAAAACAGGCATTATAGCGAGTTAGGAGACCTGAGTTCCTTCCTGTCAGGAGTCATGAACTGTGTGGCTTCTTTTAATTTCATCTTCAAAACCCTGAGGTTGCCTTTCGGTAAGTTAAGATTCCAATGGAAAGGCCAAGCCACTTCCGGCAAGTGCTATTTCACCTTCAGGCCAATCTGTGATTCACCGTTTGGGAATGCCCCCTTCTCCAATACTGGTTCACTTGGTCGCAACTGTAAAGGGTGGAGGAGGTTGTGTAGGTGACGTTTTCCCTCTCTTATGGTTGTTTAGTAGAGTCCGACTCTTTTGCGACCCTATGGACTGCATGCAGTCCATCAGGCTCCTCTGTCCATGGGATTTCCCAGACAAGAATACTAGAGAGGGTTGCCATTTCCTCCTCCAAGGGATCTTCCCCACCCAGGGATTCAACCCACGTGTCCTGCATTGGTAGGCGGATTCTTTTACCGCTGAGCCATCTGGGAAGCCTCGTCTCTTAGCTAGGTTTTGTTTTTTCTTAG
Seq C2 exon
AACTCGGAGACCATGTCTGCAGAATTCTTCTCATCCAAAAGAGAGGAGGGAAGCCTTGCCTCAGGACCTAGTTTTAGGTCCAATCAGAGGAAGATATTAAACCTGCTCCTTGAGAGAGATGCTTCCTTTTCCATCAGTTCAGATCTCCCTACAACTCCAGTGGAGAAGAAACTTTTTGGTGACTCTGCAAACCTAAGCATTTTGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005293:ENSBTAT00000006968:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.152
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCTGGCCTATCTGGTCGA
R:
GCTTAGGTTTGCAGAGTCACCA
Band lengths:
353-931
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]