RnoINT0032530 @ rn6
Intron Retention
Gene
ENSRNOG00000024008 | Cdc25c
Description
cell division cycle 25C [Source:RGD Symbol;Acc:1311875]
Coordinates
chr18:27549950-27550224:-
Coord C1 exon
chr18:27550136-27550224
Coord A exon
chr18:27550048-27550135
Coord C2 exon
chr18:27549950-27550047
Length
88 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
GAATAGCCTTGTTTTGTTAGATC
3' ss Score
2.6
Exon sequences
Seq C1 exon
CTTGTCATTCGGTGGAGTCTTCGCTTCCATCCAGTCCTGCAGGATTTTTTTTTTCTCACACAAAATTCAAGTCGGCCTTTAAACTTAAG
Seq A exon
GTAAAGCCGAGAGCTGTGTCAGTCCGGGAATCTCGGATACTGCAGGGTTCATTCGGGACCGGAAGTCCGAATAGCCTTGTTTTGTTAG
Seq C2 exon
ATCCGTTTCTTCTGGTCAAGAACGTGAAGGTGGGTGGTCCGGATCAAGCCAGTCTTCTCTGCATTCCACCTTTGAAGTCCTGAGCTTGCCGGAAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024008:ENSRNOT00000037368:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTCTTCGCTTCCATCCA
R:
CGGCAAGCTCAGGACTTCAAA
Band lengths:
168-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]