HsaINT0031561 @ hg19
Intron Retention
Gene
ENSG00000158402 | CDC25C
Description
cell division cycle 25 homolog C (S. pombe) [Source:HGNC Symbol;Acc:1727]
Coordinates
chr5:137666676-137667516:-
Coord C1 exon
chr5:137667284-137667516
Coord A exon
chr5:137666908-137667283
Coord C2 exon
chr5:137666676-137666907
Length
376 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
AGATGACGTTTTCCTCCTAGCTA
3' ss Score
4.63
Exon sequences
Seq C1 exon
GGTCAACGCCTGCGGCTGTTGATATTCTTGCTCAGAGGCCGTAACTTTGGCCTTCTGCTCAGGGAAGACTCTGAGTCCGACGTTGGCCTACCCAGTCGGAAGGCAGAGCTGCAATCTAGTTAACTACCTCCTTTCCCCTAGATTTCCTTTCATTCTGCTCAAGTCTTCGCCTGTGTCCGATCCCTATCTACTTTCTCTCCTCTTGTAGGCAAGCCTCAGACTCCAGGCTTGAG
Seq A exon
GTAAGTCCGCAGCCGTCTCCGCCACGGAATCACGGAGACCCCATTGTCCCCCTTAGGGTCCAGTCGGGCCCCCACAGACAGAGGTTGGGAGGGCCGAATGGGGACTATCGCGAGTTACGAGACCCGGGTTCTTTCTAGTCAGGAGTCTCGAGCTGTGTGGCGTGGAACAAGTCAAAATCCTCTCTTCATTCCATCTTTAAGGTCCTAAGGTTGCCTCTCGTCGGTGAATTCAGGTTCTAACCTTAAGCCAGGCTGTGAATCACCCTTCGGGGTTGCCCCTCTTCCAGTGTTGATTCGCCTGGCTGGAAAGGGTGGAGGAGTTTAGGAAAGCTGAGGGAACTGTGATGTACCGATTTAGATGACGTTTTCCTCCTAG
Seq C2 exon
CTAGGTTTTGTTTTTCTCCTGGTGAGAATTCGAAGACCATGTCTACGGAACTCTTCTCATCCACAAGAGAGGAAGGAAGCTCTGGCTCAGGACCCAGTTTTAGGTCTAATCAAAGGAAAATGTTAAACCTGCTCCTGGAGAGAGACACTTCCTTTACCGTCTGTCCAGATGTCCCTAGAACTCCAGTGGGCAAATTTCTTGGTGATTCTGCAAACCTAAGCATTTTGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158402-CDC25C:NM_001790:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.387
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGCTCAGAGGCCGTAACT
R:
GTCTCTCTCCAGGAGCAGGTT
Band lengths:
354-730
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)