RnoINT0032536 @ rn6
Intron Retention
Gene
ENSRNOG00000024008 | Cdc25c
Description
cell division cycle 25C [Source:RGD Symbol;Acc:1311875]
Coordinates
chr18:27549573-27550047:-
Coord C1 exon
chr18:27549950-27550047
Coord A exon
chr18:27549799-27549949
Coord C2 exon
chr18:27549573-27549798
Length
151 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
CTGGAGTGTTCTTCTCCTAGATA
3' ss Score
5.53
Exon sequences
Seq C1 exon
ATCCGTTTCTTCTGGTCAAGAACGTGAAGGTGGGTGGTCCGGATCAAGCCAGTCTTCTCTGCATTCCACCTTTGAAGTCCTGAGCTTGCCGGAAGTCT
Seq A exon
GTAAGTTTTCGCCCTGAGCAACTGCAATGTAATATAATATTCCAGGAGATTATACTTCATCCTACGGGGATGCTCCTCCACCCATGCTCAGCCGGGCACTGAAAAGGGTGGAGAGAGGAAGTGTTAACTATCTGGAGTGTTCTTCTCCTAG
Seq C2 exon
ATAGCTCCACCTCGCTCGGTGAAGACGCTGAGGTCATGTCTACAGTACCTTTCCCAGCTGCAAGTGAAGAGGGGAGTTATGTCTCAGCACCCAGTTTTAGGTTCAAACAAAGGAAGATGTTACACCTACTTTTGGAGAGACACGCTTCTTTTACCGTTGGTTCAGATTTCCCCGAATCTCCGGGTGACAAACTCCATGACTCGGCAAACCTAAGCCTTCTGTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024008:ENSRNOT00000037368:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.328
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGATCAAGCCAGTCTTCT
R:
TGGAGTTTGTCACCCGGAGAT
Band lengths:
257-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]