MmuINT0032760 @ mm9
Intron Retention
Gene
ENSMUSG00000044201 | Cdc25c
Description
cell division cycle 25 homolog C (S. pombe) [Source:MGI Symbol;Acc:MGI:88350]
Coordinates
chr18:34910392-34910865:-
Coord C1 exon
chr18:34910768-34910865
Coord A exon
chr18:34910618-34910767
Coord C2 exon
chr18:34910392-34910617
Length
150 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
CTGGAGTGTTCTTCTCCTAGATA
3' ss Score
5.53
Exon sequences
Seq C1 exon
ATCGGTTTCTTCTGGTCAAGAGTGTGAAACTGCGTGGTCCGGATCAAGCCAGTGTTCTCTTCGTTCCACCTTTGAAGTCCTGAGCTTGCCTGACGTCT
Seq A exon
GTAAGTTTTCGCCCTGAGCAACTGCAATGTAACATTCCAAGAGGTTAAACCCTTCATCCTACCGGGATGCTCCTCCACCCGGGCTCAGCCGGGCACTGGAAAGGGTGGAGAGACTGGAGTTGTTGAATATCTGGAGTGTTCTTCTCCTAG
Seq C2 exon
ATAGCCCCACCTCCCTCGGTGAAGACTCTGAAGTCATGTCTACAGGACCTATCCCACCTGCAAGTGAAGAGGGAAGTTTTGTTTCAGCACCCAGTTTTAGGTCCAAACAAAGGAAGATATTACACCTACTTTTGGAGAGAAACACTTCTTTTACCATCCGTTCAGATTTCCCTGAATCTCCGAAAGACAAACTCCACGACTCGGCAAACCTAAGCATTCTGTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044201-Cdc25c:NM_009860:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.562
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTCCTGAGCTTGCCTGAC
R:
ATGCTTAGGTTTGCCGAGTCG
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: