MmuEX0010412 @ mm10
Exon Skipping
Gene
ENSMUSG00000024769 | Cdc42bpg
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:MGI Symbol;Acc:MGI:2652845]
Coordinates
chr19:6310218-6310888:+
Coord C1 exon
chr19:6310218-6310366
Coord A exon
chr19:6310448-6310472
Coord C2 exon
chr19:6310795-6310888
Length
25 bp
Sequences
Splice sites
3' ss Seq
CCAGTGTGCCTATCTTACAGTTG
3' ss Score
7.66
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG
Seq A exon
TTGAGGAAGTCAGAGCTCAGAGCAG
Seq C2 exon
GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024769-'9-13,'9-12,10-13
Average complexity
C1
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.4=100)
A:
PF0006920=Pkinase=PD(0.1=0.0)
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Inclusion Isoform:
ENSMUST00000025681fB920
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTGGCCCAGTTCTATCT
R:
ATGTGGCCATTCATGTCCAGC
Band lengths:
120-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types