MmuEX0010412 @ mm9
Exon Skipping
Gene
ENSMUSG00000024769 | Cdc42bpg
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:MGI Symbol;Acc:MGI:2652845]
Coordinates
chr19:6310218-6310888:+
Coord C1 exon
chr19:6310218-6310366
Coord A exon
chr19:6310448-6310472
Coord C2 exon
chr19:6310795-6310888
Length
25 bp
Sequences
Splice sites
3' ss Seq
CCAGTGTGCCTATCTTACAGTTG
3' ss Score
7.66
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG
Seq A exon
TTGAGGAAGTCAGAGCTCAGAGCAG
Seq C2 exon
GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024769-'7-9,'7-8,8-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.4=100)
A:
PF0006920=Pkinase=PD(0.1=0.0)
C2:
PF0006920=Pkinase=FE(11.6=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTGGCCCAGTTCTATCT
R:
ATGTGGCCATTCATGTCCAGC
Band lengths:
120-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: