MmuEX0011375 @ mm9
Exon Skipping
Gene
ENSMUSG00000029205 | Chrna9
Description
cholinergic receptor, nicotinic, alpha polypeptide 9 [Source:MGI Symbol;Acc:MGI:1202403]
Coordinates
chr5:66326641-66359166:+
Coord C1 exon
chr5:66326641-66326735
Coord A exon
chr5:66329328-66329496
Coord C2 exon
chr5:66359021-66359166
Length
169 bp
Sequences
Splice sites
3' ss Seq
AACCAGCCTCCTTTTTTCAGGAA
3' ss Score
8.16
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
Exon sequences
Seq C1 exon
TGATGAAATAGCTCCTAAGTTCATCAGAACAATCCCGTTCCAAGCCAATGACCAGCTCTTCAGATGAGCTAAACTCCAGCTCTGTTGGACTCCAG
Seq A exon
GAAGTGACTCCATTTTGACAAAGTCTTGGGCAATATGACGTTGGACACAGAAACCCAGGAGACCTGAGTCTATACTGAGACCTGAAGTCATGTGCCTATGAGGAACCCTGGACGGTCATCTCCTGCTGCCCTCTGCTGGTCATGGGTGATTCCTGCATCTTGAGAGGAG
Seq C2 exon
CCGTAGAGACAGCAAATGGAAAGTATGCCCAGAAATTGTTTAGCGATCTTTTTGAAGACTACTCCAATGCTCTGCGTCCAGTAGAAGATACGGACGCGGTGCTGAACGTCACTCTGCAGGTCACGCTCTCCCAGATAAAGGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029205-'1-5,'1-1,3-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0293118=Neur_chan_LBD=PU(18.8=79.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATAGCTCCTAAGTTCATCAGA
R:
TGTCCTTTATCTGGGAGAGCGT
Band lengths:
236-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: