MmuEX0011375 @ mm10
Exon Skipping
Gene
ENSMUSG00000029205 | Chrna9
Description
cholinergic receptor, nicotinic, alpha polypeptide 9 [Source:MGI Symbol;Acc:MGI:1202403]
Coordinates
chr5:65934921-65967927:+
Coord C1 exon
chr5:65934921-65935034
Coord A exon
chr5:65938089-65938257
Coord C2 exon
chr5:65967782-65967927
Length
169 bp
Sequences
Splice sites
3' ss Seq
AACCAGCCTCCTTTTTTCAGGAA
3' ss Score
8.16
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
Exon sequences
Seq C1 exon
GAGTCCCACAGTGCACAGAGGGCACACAAACTGCAGCTGCAGTCTTCGAGGAGAAGGAAGGGATGGTGTACTCGGCAGATGCAGACGTGCATGGGAGGCCTCGCCAGCCACAAG
Seq A exon
GAAGTGACTCCATTTTGACAAAGTCTTGGGCAATATGACGTTGGACACAGAAACCCAGGAGACCTGAGTCTATACTGAGACCTGAAGTCATGTGCCTATGAGGAACCCTGGACGGTCATCTCCTGCTGCCCTCTGCTGGTCATGGGTGATTCCTGCATCTTGAGAGGAG
Seq C2 exon
CCGTAGAGACAGCAAATGGAAAGTATGCCCAGAAATTGTTTAGCGATCTTTTTGAAGACTACTCCAATGCTCTGCGTCCAGTAGAAGATACGGACGCGGTGCTGAACGTCACTCTGCAGGTCACGCTCTCCCAGATAAAGGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029205_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.583 C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0293118=Neur_chan_LBD=PU(18.8=79.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCCACAGTGCACAGAGG
R:
TATCTGGGAGAGCGTGACCTG
Band lengths:
251-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types