MmuEX0011395 @ mm10
Exon Skipping
Gene
ENSMUSG00000027221 | Chst1
Description
carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 [Source:MGI Symbol;Acc:MGI:1924219]
Coordinates
chr2:92599707-92611823:+
Coord C1 exon
chr2:92599707-92600148
Coord A exon
chr2:92608267-92608470
Coord C2 exon
chr2:92611694-92611823
Length
204 bp
Sequences
Splice sites
3' ss Seq
TTTTGGCTCGTTTCCATAAGCAT
3' ss Score
2.13
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
CAACCACCGCTGCTTTTGACTCCGAGACGCAAGGAGGGTACTCCGTGAGGCTCTGGCCTCCGAGGCTGCTGCTGTCCTCCGGAGACTGGGGCTGCAGTGCTCGGTGTCCCGGTGCCTGGCCCTGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCAGGAAAAGGCACTGTGCAGAGCGAGCCACCCGGAGCTAGCGCCCCCGAGCCATGGAGAGGGGCCCGTGAGGGACGCGCGGAGGCGGAGGAAGAGGCTTGGGAGGAGGGAGGCCGAGGAGCAGGGCGCGGGAGGAGGAGGATGCCGCCGCCACCTCCACCGCCACCACCACCCGCGGGCCCCCGGAGAGCCTGACTCTAGACTAAGGATGGAGCCAGCGCTGGGCGCTGCAGCGGCTCCCGGCGCGCCCGCCACCAG
Seq A exon
CATCGTCTGCCTCGTTCAGAAAGACAGCCCCAGGATGATAGCGTCAGGAACGAGGGAGCCCAGGTTCTGTGGAGTAGAGCAGTAGCCTGCACCCTCCCTTCAGGAGCTTCAAAACGATTCCAAATTGTGTGTGCAAAATTGGGCACAGGAAGCATTTTCTGGGAAGACGGACTGTGTTTCCAAGGAGCCTGTGGAACAGGGAAG
Seq C2 exon
GTAACTGCTGTGTGTGCTGCATATGGTTGGAAGAAGACCCCTGTCCCCAGCTGTCCCTTTGGAGCTACCTTCTCCACCTGAAGGCCTGAGGTGACTCACTTCCATCACAGGACCAGTTGAATTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027221_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAGGAAAAGGCACTGTGC
R:
ACAGGGGTCTTCTTCCAACCA
Band lengths:
304-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types