MmuEX0011395 @ mm9
Exon Skipping
Gene
ENSMUSG00000027221 | Chst1
Description
carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 [Source:MGI Symbol;Acc:MGI:1924219]
Coordinates
chr2:92439864-92451980:+
Coord C1 exon
chr2:92439864-92440305
Coord A exon
chr2:92448424-92448627
Coord C2 exon
chr2:92451851-92451980
Length
204 bp
Sequences
Splice sites
3' ss Seq
TTTTGGCTCGTTTCCATAAGCAT
3' ss Score
2.13
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
CAACCACCGCTGCTTTTGACTCCGAGACGCAAGGAGGGTACTCCGTGAGGCTCTGGCCTCCGAGGCTGCTGCTGTCCTCCGGAGACTGGGGCTGCAGTGCTCGGTGTCCCGGTGCCTGGCCCTGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCAGGAAAAGGCACTGTGCAGAGCGAGCCACCCGGAGCTAGCGCCCCCGAGCCATGGAGAGGGGCCCGTGAGGGACGCGCGGAGGCGGAGGAAGAGGCTTGGGAGGAGGGAGGCCGAGGAGCAGGGCGCGGGAGGAGGAGGATGCCGCCGCCACCTCCACCGCCACCACCACCCGCGGGCCCCCGGAGAGCCTGACTCTAGACTAAGGATGGAGCCAGCGCTGGGCGCTGCAGCGGCTCCCGGCGCGCCCGCCACCAG
Seq A exon
CATCGTCTGCCTCGTTCAGAAAGACAGCCCCAGGATGATAGCGTCAGGAACGAGGGAGCCCAGGTTCTGTGGAGTAGAGCAGTAGCCTGCACCCTCCCTTCAGGAGCTTCAAAACGATTCCAAATTGTGTGTGCAAAATTGGGCACAGGAAGCATTTTCTGGGAAGACGGACTGTGTTTCCAAGGAGCCTGTGGAACAGGGAAG
Seq C2 exon
GTAACTGCTGTGTGTGCTGCATATGGTTGGAAGAAGACCCCTGTCCCCAGCTGTCCCTTTGGAGCTACCTTCTCCACCTGAAGGCCTGAGGTGACTCACTTCCATCACAGGACCAGTTGAATTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027221-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAGGAAAAGGCACTGTGC
R:
ACAGGGGTCTTCTTCCAACCA
Band lengths:
304-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: