MmuEX0011513 @ mm10
Exon Skipping
Gene
ENSMUSG00000033392 | Clasp2
Description
CLIP associating protein 2 [Source:MGI Symbol;Acc:MGI:1923749]
Coordinates
chr9:113761590-113766671:+
Coord C1 exon
chr9:113761590-113761668
Coord A exon
chr9:113765924-113766048
Coord C2 exon
chr9:113766568-113766671
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTATTGTGACAGGTT
3' ss Score
9.33
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTATCGTTGTTAGGATTGGAGATTTTAAGTGCCTTTGTGGATAGATTGTCAACACGATTCAAATCTTATGTAACAATGG
Seq A exon
GTTCTCTGTATATAATCCAGGCTAGCCTGGTCTCAGTCCTGCTGACTGAGCCTCCCCAGTGCTGGAATTAAAGCATGCACTTCCATACCTGGCTTGAAGGCTTTTTCCCCTTGATTACACCTTCT
Seq C2 exon
TTACCACAGCTTTAATAGACAGAATGGGAGATGTCAAAGACAAAGTTCGAGAAGAAGCTCAGAACCTGACACTGAAGCTGATGGATGAGGTGGCGCCGCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033392_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(15.8=100)
A:
NO
C2:
PF123483=CLASP_N=FE(20.6=100)
Main Inclusion Isoform:
ENSMUST00000213663fB1023
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCGTTGTTAGGATTGGAGATTT
R:
GCCACCTCATCCATCAGCTTC
Band lengths:
173-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types